View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13049_low_24 (Length: 288)

Name: NF13049_low_24
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13049_low_24
NF13049_low_24
[»] chr6 (12 HSPs)
chr6 (19-74)||(20496466-20496521)
chr6 (19-74)||(5417010-5417065)
chr6 (19-74)||(10744855-10744910)
chr6 (18-63)||(12651998-12652043)
chr6 (24-67)||(8644506-8644549)
chr6 (21-67)||(32804570-32804616)
chr6 (19-67)||(904541-904589)
chr6 (21-67)||(8632989-8633035)
chr6 (36-74)||(16913615-16913653)
chr6 (36-74)||(31748247-31748285)
chr6 (20-56)||(12654114-12654150)
chr6 (19-67)||(33194867-33194915)
[»] chr7 (24 HSPs)
chr7 (23-74)||(22751679-22751730)
chr7 (30-74)||(46918683-46918727)
chr7 (19-74)||(38649144-38649199)
chr7 (34-67)||(14707870-14707903)
chr7 (30-67)||(15123802-15123839)
chr7 (21-74)||(49167200-49167253)
chr7 (21-68)||(16273657-16273704)
chr7 (24-67)||(35134994-35135037)
chr7 (19-74)||(41748313-41748368)
chr7 (21-67)||(11002118-11002164)
chr7 (20-74)||(22379495-22379549)
chr7 (36-74)||(47750024-47750062)
chr7 (21-58)||(15336051-15336088)
chr7 (21-74)||(24470679-24470732)
chr7 (21-74)||(24475627-24475680)
chr7 (21-74)||(26017444-26017497)
chr7 (21-66)||(35362901-35362946)
chr7 (30-67)||(39090372-39090409)
chr7 (18-59)||(43483860-43483901)
chr7 (39-67)||(772736-772764)
chr7 (31-67)||(23732186-23732222)
chr7 (18-74)||(28015629-28015685)
chr7 (31-67)||(32944163-32944199)
chr7 (20-72)||(33530263-33530315)
[»] chr3 (22 HSPs)
chr3 (19-74)||(34767259-34767314)
chr3 (20-74)||(39340473-39340527)
chr3 (18-67)||(32089724-32089773)
chr3 (31-70)||(25939286-25939325)
chr3 (20-67)||(53427072-53427119)
chr3 (30-67)||(50460474-50460511)
chr3 (18-74)||(913102-913158)
chr3 (19-67)||(40797306-40797354)
chr3 (21-74)||(28995095-28995148)
chr3 (30-67)||(29776483-29776520)
chr3 (21-74)||(33076560-33076613)
chr3 (20-67)||(2598352-2598399)
chr3 (20-67)||(21586173-21586220)
chr3 (20-74)||(2148029-2148083)
chr3 (21-67)||(3088457-3088503)
chr3 (36-74)||(20200844-20200882)
chr3 (36-74)||(20203026-20203064)
chr3 (36-74)||(22286537-22286575)
chr3 (21-67)||(50520058-50520104)
chr3 (30-67)||(40461788-40461825)
chr3 (19-67)||(22844325-22844373)
chr3 (30-74)||(36540483-36540527)
[»] chr2 (35 HSPs)
chr2 (20-67)||(34480239-34480286)
chr2 (31-74)||(11931157-11931200)
chr2 (20-67)||(25622837-25622884)
chr2 (19-74)||(44441652-44441707)
chr2 (20-74)||(4878522-4878576)
chr2 (21-74)||(27191119-27191172)
chr2 (21-74)||(27840933-27840986)
chr2 (21-77)||(38822347-38822403)
chr2 (32-74)||(17056255-17056297)
chr2 (32-74)||(17068702-17068744)
chr2 (32-74)||(17074699-17074741)
chr2 (32-74)||(17095272-17095314)
chr2 (21-74)||(3603260-3603313)
chr2 (21-74)||(15673754-15673807)
chr2 (21-74)||(18141267-18141320)
chr2 (21-74)||(25516767-25516820)
chr2 (22-67)||(26491577-26491622)
chr2 (21-74)||(43567148-43567201)
chr2 (19-74)||(7443352-7443407)
chr2 (20-67)||(12366142-12366189)
chr2 (20-67)||(13268846-13268893)
chr2 (32-67)||(17118607-17118642)
chr2 (19-74)||(20036655-20036710)
chr2 (32-67)||(28228508-28228543)
chr2 (31-74)||(37883938-37883981)
chr2 (31-74)||(40125672-40125715)
chr2 (21-67)||(9715337-9715383)
chr2 (21-67)||(16720641-16720687)
chr2 (36-74)||(36508219-36508257)
chr2 (36-74)||(44167497-44167535)
chr2 (21-74)||(7640142-7640195)
chr2 (21-74)||(41177133-41177186)
chr2 (21-74)||(43929086-43929139)
chr2 (20-56)||(4732350-4732386)
chr2 (30-74)||(15920158-15920202)
[»] chr8 (21 HSPs)
chr8 (18-67)||(37720112-37720161)
chr8 (24-67)||(5989891-5989934)
chr8 (20-67)||(16809137-16809184)
chr8 (20-74)||(31712862-31712916)
chr8 (19-67)||(12244009-12244057)
chr8 (19-67)||(16937132-16937180)
chr8 (24-67)||(283798-283841)
chr8 (24-67)||(632036-632079)
chr8 (24-67)||(817848-817891)
chr8 (20-67)||(3028290-3028337)
chr8 (19-74)||(32256507-32256562)
chr8 (20-74)||(3925476-3925530)
chr8 (20-67)||(2629184-2629231)
chr8 (33-64)||(9799807-9799838)
chr8 (19-74)||(12248497-12248552)
chr8 (21-67)||(9992941-9992987)
chr8 (30-64)||(15237441-15237475)
chr8 (30-67)||(5917542-5917579)
chr8 (20-73)||(13977682-13977735)
chr8 (30-67)||(17019384-17019421)
chr8 (30-67)||(17549821-17549858)
[»] chr5 (15 HSPs)
chr5 (21-74)||(6647699-6647752)
chr5 (19-74)||(8811938-8811993)
chr5 (19-74)||(34844189-34844244)
chr5 (19-74)||(41554760-41554815)
chr5 (31-64)||(32387749-32387782)
chr5 (19-63)||(28388905-28388949)
chr5 (19-67)||(40775034-40775082)
chr5 (20-67)||(18472519-18472566)
chr5 (19-74)||(33486355-33486410)
chr5 (24-74)||(11734623-11734673)
chr5 (21-74)||(31646104-31646157)
chr5 (22-74)||(6886964-6887016)
chr5 (19-67)||(13007964-13008012)
chr5 (19-67)||(13080427-13080475)
chr5 (22-74)||(29098071-29098123)
[»] chr4 (24 HSPs)
chr4 (21-74)||(29576907-29576960)
chr4 (18-76)||(15729765-15729823)
chr4 (20-72)||(26576291-26576343)
chr4 (19-67)||(38434871-38434919)
chr4 (19-74)||(46728706-46728761)
chr4 (20-67)||(46775651-46775698)
chr4 (21-74)||(30469909-30469962)
chr4 (21-74)||(34115442-34115495)
chr4 (19-67)||(6408718-6408766)
chr4 (30-74)||(14346715-14346759)
chr4 (20-60)||(38169960-38170000)
chr4 (24-63)||(7242583-7242622)
chr4 (19-74)||(29474114-29474169)
chr4 (19-74)||(51646370-51646425)
chr4 (20-74)||(6082217-6082271)
chr4 (36-74)||(23002718-23002756)
chr4 (21-74)||(11817331-11817384)
chr4 (30-67)||(19885759-19885796)
chr4 (21-74)||(20961723-20961776)
chr4 (21-74)||(23926316-23926369)
chr4 (30-67)||(43157061-43157098)
chr4 (21-74)||(46716680-46716733)
chr4 (19-67)||(4959367-4959415)
chr4 (30-70)||(47923545-47923585)
[»] scaffold1294 (1 HSPs)
scaffold1294 (19-67)||(1048-1096)
[»] chr1 (17 HSPs)
chr1 (15-67)||(171289-171341)
chr1 (30-74)||(33177384-33177428)
chr1 (21-67)||(26771381-26771427)
chr1 (19-67)||(44513795-44513843)
chr1 (18-65)||(8893565-8893611)
chr1 (20-67)||(22031895-22031942)
chr1 (21-74)||(2350897-2350950)
chr1 (21-74)||(33703296-33703349)
chr1 (30-67)||(47392420-47392457)
chr1 (19-67)||(12147841-12147889)
chr1 (20-67)||(10877621-10877668)
chr1 (31-74)||(13969426-13969469)
chr1 (32-67)||(29067333-29067368)
chr1 (30-67)||(34659434-34659471)
chr1 (21-74)||(38644583-38644636)
chr1 (21-65)||(4564791-4564835)
chr1 (31-67)||(32538981-32539017)
[»] scaffold0340 (1 HSPs)
scaffold0340 (19-70)||(11566-11617)
[»] scaffold0023 (1 HSPs)
scaffold0023 (20-67)||(91197-91244)
[»] scaffold0045 (1 HSPs)
scaffold0045 (36-74)||(9444-9482)
[»] scaffold0150 (1 HSPs)
scaffold0150 (30-67)||(10122-10159)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 20496466 - 20496521
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  20496466 ggtattccggagacttgaatatagtcatatgtgtaggcttttgtactttgccgttt 20496521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 5417065 - 5417010
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  5417065 ggtatttcggagacttgaatatagtcatatgtgtatgcttttgtactttgccgttt 5417010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 10744855 - 10744910
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||    
T  10744855 ggtattccggagacttaaatatagtcatatgtgtaggctttagtactttgccgttt 10744910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 12652043 - 12651998
Alignment:
Q  18 aggtattccggcgacttgaatatagtcatatgtgtaggcttttgta 63  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||    
T  12652043 aggtattccggagacttgaatatagtcatatgtgtaggtttttgta 12651998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 8644506 - 8644549
Alignment:
Q  24 tccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||    
T  8644506 tccggagactttaatatagtcatatgtgtaggcttttgtacttt 8644549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 32804570 - 32804616
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||| | |||||||||||||| |||||||||||||||||||||||    
T  32804570 tattccagagacttgaatatagttatatgtgtaggcttttgtacttt 32804616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 904541 - 904589
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||| | |||||||||||||||||  |||||||||||||||||||    
T  904541 ggtattccagtgacttgaatatagtcatccgtgtaggcttttgtacttt 904589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 8633035 - 8632989
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||| || || ||||||||||||||||||||| ||||||||||    
T  8633035 tattccggagatttaaatatagtcatatgtgtaggcatttgtacttt 8632989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 16913615 - 16913653
Alignment:
Q  36 aatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  16913615 aatatagtcatatgtgtaggcatttgtactttgccgttt 16913653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 31748247 - 31748285
Alignment:
Q  36 aatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  31748247 aatatagtcatatgtgtaggcatttgtactttgccgttt 31748285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 12654150 - 12654114
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggc 56  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  12654150 gtattccggagacttgaatatagtcatatttgtaggc 12654114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 33194867 - 33194915
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||| || ||||||||||||||| |||||||||| | |||||||||    
T  33194867 ggtattctggagacttgaatatagtcttatgtgtaggttgttgtacttt 33194915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 22751679 - 22751730
Alignment:
Q  23 ttccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  22751679 ttccggagaattgaatatagtcatatgtgtaggcttttgtactttaccgttt 22751730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 46918683 - 46918727
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  46918683 gacttgaatatagtcatatgtataggcttttgtactttgccgttt 46918727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 38649199 - 38649144
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||| ||||| |||||||||||||||||| ||||| ||||||| ||||||    
T  38649199 ggtattccggagacttaaatatagtcatatgtgtaagctttagtactttgccgttt 38649144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 67
Target Start/End: Original strand, 14707870 - 14707903
Alignment:
Q  34 tgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||||||||||||||||||||||||||||    
T  14707870 tgaatatagtcatatgtgtaggcttttgtacttt 14707903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 15123839 - 15123802
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||||||||||||||||||| |||||||||||    
T  15123839 gacttgaatatagtcatatgtgtaggtttttgtacttt 15123802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 49167200 - 49167253
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| ||||||    
T  49167200 tattccggagatttaaatatagtcatatgtgtaggcatttgtactttgccgttt 49167253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 21 - 68
Target Start/End: Original strand, 16273657 - 16273704
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtacttta 68  Q
    |||||||| ||||| |||||| ||||||||||||||||| ||||||||    
T  16273657 tattccggagacttaaatataatcatatgtgtaggctttagtacttta 16273704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 35135037 - 35134994
Alignment:
Q  24 tccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||    
T  35135037 tccggggacttgaatatagtcatatgtgtaaacttttgtacttt 35134994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 41748368 - 41748313
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||| ||||| |||||||| ||||||||||| ||| ||||||| ||||||    
T  41748368 ggtattccggagacttaaatatagttatatgtgtaggttttagtactttgccgttt 41748313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 11002118 - 11002164
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||| || || ||||||||||||||||||||| ||||||||||    
T  11002118 tattccggagatttaaatatagtcatatgtgtaggcatttgtacttt 11002164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 22379549 - 22379495
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||| | |||||||||||||||||||||| ||| |||| |||||| ||||||    
T  22379549 gtattccagagacttgaatatagtcatatgtgcaggtttttttactttgccgttt 22379495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 47750024 - 47750062
Alignment:
Q  36 aatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  47750024 aatatagtcatatgtgtaggcatttgtactttgccgttt 47750062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 15336051 - 15336088
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggctt 58  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  15336051 tattccggagacttgaatatagtcatatttgtaggctt 15336088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 24470679 - 24470732
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || |||||||||||||||| |||| |||||||||| ||||||    
T  24470679 tattccggagatttaaatatagtcatatgtgaaggcatttgtactttgccgttt 24470732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 24475627 - 24475680
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || |||||||||||||||| |||| |||||||||| ||||||    
T  24475627 tattccggagatttaaatatagtcatatgtgaaggcatttgtactttgccgttt 24475680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 26017497 - 26017444
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| ||||||| || ||||||    
T  26017497 tattccggagatttaaatatagtcatatgtgtaggcatttgtaccttgccgttt 26017444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 66
Target Start/End: Complemental strand, 35362946 - 35362901
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactt 66  Q
    |||| ||| |||||||||||| |||||||||||| |||||||||||    
T  35362946 tatttcggagacttgaatataatcatatgtgtagccttttgtactt 35362901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 39090372 - 39090409
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  39090372 gacttaaatatagtcatatgtgtaggctttagtacttt 39090409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 43483860 - 43483901
Alignment:
Q  18 aggtattccggcgacttgaatatagtcatatgtgtaggcttt 59  Q
    ||||||||||| ||| | ||||||||||||||||||||||||    
T  43483860 aggtattccggagacataaatatagtcatatgtgtaggcttt 43483901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 67
Target Start/End: Original strand, 772736 - 772764
Alignment:
Q  39 atagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||||||||||||||||||||||    
T  772736 atagtcatatgtgtaggcttttgtacttt 772764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 23732222 - 23732186
Alignment:
Q  31 acttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  23732222 acttgaatataatcatatgtgtatgcttttgtacttt 23732186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 28015629 - 28015685
Alignment:
Q  18 aggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || | ||| |||||| ||||||||||||||||| ||||||| ||||||    
T  28015629 aggtattctggaggcttaaatatattcatatgtgtaggctttagtactttgccgttt 28015685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 32944163 - 32944199
Alignment:
Q  31 acttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  32944163 acttgaatataatcatatgtgtagacttttgtacttt 32944199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 33530315 - 33530263
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgt 72  Q
    ||||| ||| |||||||||||||||||| ||||||| ||||||| ||| ||||    
T  33530315 gtatttcggagacttgaatatagtcataagtgtaggtttttgtattttgccgt 33530263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 34767259 - 34767314
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  34767259 ggtattccggagacttgaatatagtcttatgtgtaggcttttgtactttgccgttt 34767314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 39340473 - 39340527
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||    
T  39340473 gtattccggagacttgaatatagtcatatgtgtaggcttttatacttttccgttt 39340527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 32089773 - 32089724
Alignment:
Q  18 aggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  32089773 aggtattccggagacttgaatatagtcacatgtgtaggcttttgtacttt 32089724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 25939325 - 25939286
Alignment:
Q  31 acttgaatatagtcatatgtgtaggcttttgtactttacc 70  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  25939325 acttgaatatagtcatatgtgtaggcttttgtactttacc 25939286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 53427072 - 53427119
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  53427072 gtattccgaagacttgaatatagtcatatgtgtaggcttttgtacttt 53427119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 50460474 - 50460511
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||||||||||||||||||||||||||||||||    
T  50460474 gacttgaatatagtcatatgtgtaggcttttgtacttt 50460511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 913158 - 913102
Alignment:
Q  18 aggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||| ||| ||||| |||||||||||||||||||||||| ||||||| ||||||    
T  913158 aggtatttcggagacttaaatatagtcatatgtgtaggctttagtactttgccgttt 913102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 40797306 - 40797354
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  40797306 ggtattccggagacttaaatatagtcatatgtgtaggctttagtacttt 40797354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 28995148 - 28995095
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| ||||||    
T  28995148 tattccggagatttaaatatagtcatatgtgtaggcatttgtactttgccgttt 28995095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 29776520 - 29776483
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||||||||||||||| |||||||||||||||    
T  29776520 gacttgaatatagtcatatgtgcaggcttttgtacttt 29776483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 33076560 - 33076613
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || |||||||||||||||||||| ||| |||||||||| ||||||    
T  33076560 tattccggagatttgaatatagtcatatgtgttggcatttgtactttgccgttt 33076613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 2598352 - 2598399
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||| ||| |||| |||||||||||||||||||||| ||||||||||    
T  2598352 gtatttcggagactagaatatagtcatatgtgtaggcatttgtacttt 2598399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 21586173 - 21586220
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||| || ||||||||||| |||||||||| ||||||||||||    
T  21586173 gtattccggagagttgaatatagtgatatgtgtagccttttgtacttt 21586220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 2148029 - 2148083
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||  ||||||||||||||||||| ||||| | |||||||||| ||||||    
T  2148029 gtattccgaagacttgaatatagtcatatttgtagacatttgtactttgccgttt 2148083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 3088503 - 3088457
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||| || || ||||||||||||||||||||| ||||||||||    
T  3088503 tattccggagatttaaatatagtcatatgtgtaggcatttgtacttt 3088457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 20200882 - 20200844
Alignment:
Q  36 aatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  20200882 aatatagtcatatgtgtaggcatttgtactttgccgttt 20200844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 20203064 - 20203026
Alignment:
Q  36 aatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  20203064 aatatagtcatatgtgtaggcatttgtactttgccgttt 20203026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 22286575 - 22286537
Alignment:
Q  36 aatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  22286575 aatatagtcatatgtgtaggcatttgtactttgccgttt 22286537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 50520058 - 50520104
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||| || || ||||||||||||||||||||| ||||||||||    
T  50520058 tattccggagatttaaatatagtcatatgtgtaggcatttgtacttt 50520104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 40461825 - 40461788
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  40461825 gacttgaatatagtcatatgtatagccttttgtacttt 40461788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 22844325 - 22844373
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||| ||| | |||||||||||||| ||||||||| |||||||    
T  22844325 ggtattccggagacctaaatatagtcatatgcgtaggctttagtacttt 22844373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 36540527 - 36540483
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||| |||||||||||  ||||||| ||||||    
T  36540527 gacttgaatatagtcatttgtgtaggcttcagtactttgccgttt 36540483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 34480239 - 34480286
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  34480239 gtattccggcgacttgaatatagtcatatgtgtaggtttttgtacttt 34480286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 11931157 - 11931200
Alignment:
Q  31 acttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  11931157 acttgaatatagtcatatgtgtaggcttttgtactttgccgttt 11931200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 25622884 - 25622837
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  25622884 gtattccggagactttaatatagtcatatgtgtaggcttttgtacttt 25622837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 44441652 - 44441707
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||| ||||||||||||||||||||||| | |||||||||||| ||||||    
T  44441652 ggtattccggagacttgaatatagtcatatgtgtggacttttgtactttgccgttt 44441707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 4878576 - 4878522
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||| |||||||    
T  4878576 gtattccggtgacttaaatatagtcatatgtgtaggctttagtacttgaccgttt 4878522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 27191172 - 27191119
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| |||||||||||||||||    
T  27191172 tattccggagatttaaatatagtcatatgtgtaggcatttgtactttaccgttt 27191119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 27840986 - 27840933
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| |||||||||||||||||    
T  27840986 tattccggagatttaaatatagtcatatgtgtaggcatttgtactttaccgttt 27840933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 38822347 - 38822403
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgtttcat 77  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| |||||||||    
T  38822347 tattccggagatttaaatatagtcatatgtgtaggcatttgtactttgccgtttcat 38822403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 17056297 - 17056255
Alignment:
Q  32 cttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  17056297 cttgaatatagtcatatgtgtagacttttgtactttgccgttt 17056255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 17068744 - 17068702
Alignment:
Q  32 cttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  17068744 cttgaatatagtcatatgtgtagacttttgtactttgccgttt 17068702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 17074741 - 17074699
Alignment:
Q  32 cttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  17074741 cttgaatatagtcatatgtgtagacttttgtactttgccgttt 17074699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 17095314 - 17095272
Alignment:
Q  32 cttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||||| |||||||||||| ||||||    
T  17095314 cttgaatatagtcatatgtgtagacttttgtactttgccgttt 17095272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 3603260 - 3603313
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| ||||||    
T  3603260 tattccggagatttaaatatagtcatatgtgtaggcatttgtactttgccgttt 3603313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 15673807 - 15673754
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| ||||| |||||||||||||||||||||||| ||| ||| ||||||    
T  15673807 tattccggagacttaaatatagtcatatgtgtaggctttagtattttgccgttt 15673754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 18141320 - 18141267
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| ||||||    
T  18141320 tattccggagatttaaatatagtcatatgtgtaggcatttgtactttgccgttt 18141267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 25516767 - 25516820
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| ||||||    
T  25516767 tattccggagatttaaatatagtcatatgtgtaggcatttgtactttgccgttt 25516820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 26491577 - 26491622
Alignment:
Q  22 attccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||| ||||| |||||||||||||||||||||||| |||||||    
T  26491577 attccggagacttaaatatagtcatatgtgtaggctttagtacttt 26491622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 43567148 - 43567201
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| ||||||    
T  43567148 tattccggagatttaaatatagtcatatgtgtaggcatttgtactttgccgttt 43567201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 7443407 - 7443352
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||  |||| |||||| ||||||||||||||||| ||||||||| ||||    
T  7443407 ggtattccggaaacttaaatataatcatatgtgtaggctttagtactttacagttt 7443352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 12366142 - 12366189
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||| ||||| ||||| |||||||||||||||||| |||||||    
T  12366142 gtattccggtgacttaaatattgtcatatgtgtaggctttagtacttt 12366189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 13268846 - 13268893
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||| | |||||||||||||||| ||||||| |||||||||||||    
T  13268846 gtattccagagacttgaatatagtcacatgtgtaagcttttgtacttt 13268893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Complemental strand, 17118642 - 17118607
Alignment:
Q  32 cttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||||||||||||||||||| ||||||||||    
T  17118642 cttgaatatagtcatatgtgtaggcgtttgtacttt 17118607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 20036655 - 20036710
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||  |||||| ||||||||  |||||||||||| |||||||||||||||    
T  20036655 ggtattccgtagacttggatatagtctaatgtgtaggcttctgtactttaccgttt 20036710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 28228508 - 28228543
Alignment:
Q  32 cttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||||||||||||||||||||||| ||||||    
T  28228508 cttgaatatagtcatatgtgtaggcttttttacttt 28228543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 37883938 - 37883981
Alignment:
Q  31 acttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||    
T  37883938 acttaaatatagtcatatgtgtaggctttagtactttgccgttt 37883981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 40125672 - 40125715
Alignment:
Q  31 acttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||| |||||||||||||||||||||||| ||||||| ||||||    
T  40125672 acttaaatatagtcatatgtgtaggctttagtactttgccgttt 40125715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 9715383 - 9715337
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||  |||||||||||||||| | |||||||||||||||||||    
T  9715383 tattccgcagacttgaatatagtcaaacgtgtaggcttttgtacttt 9715337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 16720687 - 16720641
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||| || ||||| ||||||||||||||||||||| ||||||||||    
T  16720687 tattctggagacttaaatatagtcatatgtgtaggcatttgtacttt 16720641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Original strand, 36508219 - 36508257
Alignment:
Q  36 aatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  36508219 aatatagtcatatgtgtaggcatttgtactttgccgttt 36508257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 44167535 - 44167497
Alignment:
Q  36 aatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  44167535 aatatagtcatatgtgtaggcatttgtactttgccgttt 44167497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 7640195 - 7640142
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| ||||||| || ||||||    
T  7640195 tattccggagatttaaatatagtcatatgtgtaggcatttgtaccttgccgttt 7640142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 41177133 - 41177186
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || |||||| |||||||||||||| |||||||||| ||||||    
T  41177133 tattccggagatttaaatatattcatatgtgtaggcatttgtactttgccgttt 41177186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 43929139 - 43929086
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| ||||||| || ||||||    
T  43929139 tattccggagatttaaatatagtcatatgtgtaggcatttgtaccttgccgttt 43929086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 4732350 - 4732386
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggc 56  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  4732350 gtattccggagacttgaatatagtcatatttgtaggc 4732386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 15920158 - 15920202
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||| ||||||| | |||||||| ||||||    
T  15920158 gacttgaatatagtcatatttgtaggcatatgtactttgccgttt 15920202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 37720112 - 37720161
Alignment:
Q  18 aggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  37720112 aggtattccgtagacttgaatatagtcatatgtgtaggcttttgtacttt 37720161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 5989891 - 5989934
Alignment:
Q  24 tccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  5989891 tccggagacttgaatatagtcatatgtgtaggcttttgtacttt 5989934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 16809137 - 16809184
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  16809137 gtattccggagacttgaatatagtcatatgtgtaggcttctgtacttt 16809184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 31712916 - 31712862
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||| ||||| |||||||||||||||||||||||| |||||| |||||||    
T  31712916 gtattccggtgacttaaatatagtcatatgtgtaggctttagtacttgaccgttt 31712862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 12244057 - 12244009
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||||    
T  12244057 ggtattccagagacttgaatatagttatatgtgtaggcttttgtacttt 12244009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 16937180 - 16937132
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  16937180 ggtattccggagacttaaatatagtcatatgtgtaggctttagtacttt 16937132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 283841 - 283798
Alignment:
Q  24 tccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||    
T  283841 tccggagacttgaatatagtcatatgtgtaggcttttttacttt 283798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 632036 - 632079
Alignment:
Q  24 tccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||    
T  632036 tccggagacttgaatatagtcatatgtgtaggcttttttacttt 632079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 817848 - 817891
Alignment:
Q  24 tccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||    
T  817848 tccggagacttgaatatagtcatatgtgtaggcttttttacttt 817891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 3028290 - 3028337
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||| || ||||||||||||||||||||||||| ||||||||||||    
T  3028290 gtattctggagacttgaatatagtcatatgtgtagacttttgtacttt 3028337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 32256562 - 32256507
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||| ||||| ||||||||||||||||| |||||| ||||||| ||||||    
T  32256562 ggtattccggagacttaaatatagtcatatgtgtcggctttagtactttgccgttt 32256507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 3925530 - 3925476
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||| ||||| |||||| ||||||||||||||||| ||||||| ||||||    
T  3925530 gtattccggagacttaaatataatcatatgtgtaggctttagtactttgccgttt 3925476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 2629184 - 2629231
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||| ||||| |||||||||||||||||||| ||| |||||||    
T  2629184 gtattccggagacttaaatatagtcatatgtgtaggatttagtacttt 2629231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 64
Target Start/End: Complemental strand, 9799838 - 9799807
Alignment:
Q  33 ttgaatatagtcatatgtgtaggcttttgtac 64  Q
    ||||||||||||||||||||||||||||||||    
T  9799838 ttgaatatagtcatatgtgtaggcttttgtac 9799807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 12248552 - 12248497
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| | ||||| |||||||||||||||||||||||| ||| ||| ||||||    
T  12248552 ggtattccagagacttaaatatagtcatatgtgtaggctttagtattttgccgttt 12248497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 9992941 - 9992987
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||| || || ||||||||||||||||||||| ||||||||||    
T  9992941 tattccggagatttaaatatagtcatatgtgtaggcatttgtacttt 9992987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Complemental strand, 15237475 - 15237441
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtac 64  Q
    |||||||||||| ||||||||||||||||||||||    
T  15237475 gacttgaatataatcatatgtgtaggcttttgtac 15237441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 5917579 - 5917542
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  5917579 gacttgaatatattcatatgtgtaggctattgtacttt 5917542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 13977682 - 13977735
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgtt 73  Q
    |||||| || |||||||||||| ||||||||| |||||||||||| || |||||    
T  13977682 gtattctggagacttgaatataatcatatgtgcaggcttttgtaccttgccgtt 13977735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 17019384 - 17019421
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  17019384 gacttgaagatagtcatatgtgtaggattttgtacttt 17019421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 17549821 - 17549858
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  17549821 gacttgaagatagtcatatgtgtaggattttgtacttt 17549858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 6647752 - 6647699
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||| ||||||    
T  6647752 tattccggagactttaatatagtcatatgtgtaggcttttgtacttttccgttt 6647699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 8811993 - 8811938
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||    
T  8811993 ggtattccggagacttaaatatagtcatatgtgtaggctttagtactttgccgttt 8811938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 34844189 - 34844244
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||| |||||||| |||||||||||||||||||||||| ||||||| ||||||    
T  34844189 ggtattctggcgacttaaatatagtcatatgtgtaggctttagtactttgccgttt 34844244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 41554760 - 41554815
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||    
T  41554760 ggtattccggagacttaaatatagtcatatgtgtaggctttagtactttgccgttt 41554815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 32387749 - 32387782
Alignment:
Q  31 acttgaatatagtcatatgtgtaggcttttgtac 64  Q
    ||||||||||||||||||||||||||||||||||    
T  32387749 acttgaatatagtcatatgtgtaggcttttgtac 32387782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 28388949 - 28388905
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgta 63  Q
    |||||||||| |||||||||||| |||||||||||| ||||||||    
T  28388949 ggtattccggagacttgaatataatcatatgtgtagacttttgta 28388905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 40775034 - 40775082
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||||  |||| |||||||||||||||||||||||| |||||||    
T  40775034 ggtattccggaaacttaaatatagtcatatgtgtaggctttagtacttt 40775082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 18472566 - 18472519
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||| |||||  ||||||||||||||||||||||| |||||||    
T  18472566 gtattccggagacttacatatagtcatatgtgtaggctttagtacttt 18472519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 33486410 - 33486355
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||| || ||||| ||||| |||||||||||||||||| ||||||| ||||||    
T  33486410 ggtattctggagacttaaatatggtcatatgtgtaggctttagtactttgccgttt 33486355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 11734673 - 11734623
Alignment:
Q  24 tccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||| ||||||||||||||||||| ||||||| | |||||||| ||||||    
T  11734673 tccggagacttgaatatagtcatatttgtaggcatatgtactttgccgttt 11734623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 31646104 - 31646157
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || |||||||||||||||||||||  ||||||||| ||||||    
T  31646104 tattccggagatttaaatatagtcatatgtgtaggcaattgtactttgccgttt 31646157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Complemental strand, 6887016 - 6886964
Alignment:
Q  22 attccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||| || || |||||||||||||||||||||  ||||||||| ||||||    
T  6887016 attccggagatttaaatatagtcatatgtgtaggcaattgtactttgccgttt 6886964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 13007964 - 13008012
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||| ||||||||||| ||||||| |||| | |||||||||||    
T  13007964 ggtattccggagacttgaatattgtcatatatgtatgtttttgtacttt 13008012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 13080427 - 13080475
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||| ||||||||||| ||||||| |||| | |||||||||||    
T  13080427 ggtattccggagacttgaatattgtcatatatgtatgtttttgtacttt 13080475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 29098071 - 29098123
Alignment:
Q  22 attccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||| ||||||||||||||||||| ||||||| | ||||| || ||||||    
T  29098071 attccggagacttgaatatagtcatatttgtaggcatatgtaccttgccgttt 29098123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 29576960 - 29576907
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| ||||||||||||||||||||||||||||||||||| || ||||||    
T  29576960 tattccggagacttgaatatagtcatatgtgtaggcttttgtaccttgccgttt 29576907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 15729823 - 15729765
Alignment:
Q  18 aggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgtttca 76  Q
    ||||||| ||| ||||| |||||||||||||||||||||||| ||||||| ||||||||    
T  15729823 aggtatttcggagacttaaatatagtcatatgtgtaggctttagtactttgccgtttca 15729765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 26576343 - 26576291
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgt 72  Q
    ||||||||| ||||  |||||||||||||||||||||||| ||||||||||||    
T  26576343 gtattccggagactcaaatatagtcatatgtgtaggctttagtactttaccgt 26576291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 38434871 - 38434919
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  38434871 ggtattccggagacttaaatatagtcatatgtgtaggctttagtacttt 38434919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 46728761 - 46728706
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| | ||||| |||||||||||||||||||||||| ||||||| ||||||    
T  46728761 ggtattccagagacttaaatatagtcatatgtgtaggctttagtactttgccgttt 46728706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 46775698 - 46775651
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  46775698 gtattccggagacttgaatataatcatatgtgtaggcttttgtgcttt 46775651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 30469962 - 30469909
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| ||||||    
T  30469962 tattccggagatttaaatatagtcatatgtgtaggcatttgtacttttccgttt 30469909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 34115495 - 34115442
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| |||||||||| ||||||    
T  34115495 tattccggagatttaaatatagtcatatgtgtaggcatttgtactttgccgttt 34115442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 6408718 - 6408766
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||| ||||| ||||||||||| |||||||||||| |||||||    
T  6408718 ggtattccggagacttaaatatagtcatctgtgtaggctttggtacttt 6408766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 14346715 - 14346759
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||||    
T  14346715 gacttaaatatagtcatatgtgtaggctttagtactttgccgttt 14346759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 38170000 - 38169960
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggctttt 60  Q
    ||||||||| |||||||||||||||||| ||||||||||||    
T  38170000 gtattccggagacttgaatatagtcatacgtgtaggctttt 38169960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 63
Target Start/End: Complemental strand, 7242622 - 7242583
Alignment:
Q  24 tccggcgacttgaatatagtcatatgtgtaggcttttgta 63  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  7242622 tccggagacttgaatatagtcagatgtgtaggcttttgta 7242583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Complemental strand, 29474169 - 29474114
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||| | ||| ||||||||||||||||||| |||| ||||||| ||||||    
T  29474169 ggtattccggaggcttaaatatagtcatatgtgtagtctttagtactttgccgttt 29474114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 74
Target Start/End: Original strand, 51646370 - 51646425
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| | ||||| ||||||||||||||||||||||||  |||||| ||||||    
T  51646370 ggtattccagagacttaaatatagtcatatgtgtaggctttaatactttgccgttt 51646425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 6082271 - 6082217
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||| || ||||||||||||||||||| ||||||| | |||||||| ||||||    
T  6082271 gtattctggagacttgaatatagtcatatttgtaggcatatgtactttgccgttt 6082217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 23002756 - 23002718
Alignment:
Q  36 aatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  23002756 aatatagtcatatgtgtaggcatttgtactttgccgttt 23002718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 11817331 - 11817384
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||| ||||||||| |||||||| ||||||    
T  11817331 tattccggagattttaatatagtcatatatgtaggcttatgtactttgccgttt 11817384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 19885796 - 19885759
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||| ||||||||||| |||||||||||||||||    
T  19885796 gacttgaaaatagtcatatgagtaggcttttgtacttt 19885759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 20961723 - 20961776
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || |||||| |||||||||||||| |||||||||| ||||||    
T  20961723 tattccggagatttaaatatattcatatgtgtaggcatttgtactttgccgttt 20961776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 23926316 - 23926369
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||| ||||||||| |||||||| ||||||    
T  23926316 tattccggagattttaatatagtcatatttgtaggcttatgtactttgccgttt 23926369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 43157061 - 43157098
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||| |||||||||||||||||||||||| |||||||    
T  43157061 gacttaaatatagtcatatgtgtaggctttagtacttt 43157098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 46716733 - 46716680
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||||||||||| ||||||| || ||||||    
T  46716733 tattccggagatttaaatatagtcatatgtgtaggcatttgtaccttgccgttt 46716680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 4959415 - 4959367
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||  |||||||||||||||||  |||||| ||||||||||||    
T  4959415 ggtattccgtagacttgaatatagtcatgggtgtagacttttgtacttt 4959367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 47923545 - 47923585
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtactttacc 70  Q
    ||||||||||||||||||| ||||||||| | |||||||||    
T  47923545 gacttgaatatagtcatatttgtaggcttatctactttacc 47923585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1294 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 1048 - 1096
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||    
T  1048 ggtattccgatgacttgaatatagtcatatgtgtaggcttttgtacttt 1096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 171289 - 171341
Alignment:
Q  15 atcaggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||||||| |||||||||||| |||||| ||||||||||||||||||    
T  171289 atcaggtattccggagacttgaatataatcatatatgtaggcttttgtacttt 171341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 33177428 - 33177384
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  33177428 gacttgaatatagtcatatgtgtaggcttttgtactttgccgttt 33177384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 67
Target Start/End: Original strand, 26771381 - 26771427
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||    
T  26771381 tatttcggagacttgaatatagtcatatgtgtaggcttttgtacttt 26771427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 44513843 - 44513795
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  44513843 ggtattccggagacttaaatatagtcatatgtgtaggctttagtacttt 44513795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 8893565 - 8893611
Alignment:
Q  18 aggtattccggcgacttgaatatagtcatatgtgtaggcttttgtact 65  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||    
T  8893565 aggtattccggaga-ttgaatatagtcatatgtgtaggcttttgtact 8893611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 22031942 - 22031895
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||||| |||||||||||| |||||||||||| ||||||||||||    
T  22031942 gtattccggagacttgaatataatcatatgtgtagacttttgtacttt 22031895  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 2350897 - 2350950
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || ||||||||||||| |||||||||||||||||| ||||||    
T  2350897 tattccggagattttaatatagtcatatttgtaggcttttgtactttgccgttt 2350950  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 33703349 - 33703296
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||| | ||||| |||||||||||||||||||||||| ||||||| ||||||    
T  33703349 tattccagagacttaaatatagtcatatgtgtaggctttagtactttgccgttt 33703296  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 67
Target Start/End: Original strand, 47392420 - 47392457
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||||||||||||||||| |||||||||||||    
T  47392420 gacttgaatatagtcatatgtgtatgcttttgtacttt 47392457  T

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Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 12147889 - 12147841
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||| ||||| | |||||||||||||||||||||| |||||||    
T  12147889 ggtattccggagacttaagtatagtcatatgtgtaggctttagtacttt 12147841  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 10877621 - 10877668
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    ||||||| | || |||||| ||||||||||||||||||||||||||||    
T  10877621 gtattccagagaattgaatgtagtcatatgtgtaggcttttgtacttt 10877668  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 13969469 - 13969426
Alignment:
Q  31 acttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||    
T  13969469 acttgaatatagtaatatgtataggcttttgtactttgccgttt 13969426  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 67
Target Start/End: Original strand, 29067333 - 29067368
Alignment:
Q  32 cttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||| |||||||||||||||||||||||||||||    
T  29067333 cttgaaaatagtcatatgtgtaggcttttgtacttt 29067368  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 34659471 - 34659434
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  34659471 gacttgaatatagtcataagtgtaggcttttttacttt 34659434  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 38644636 - 38644583
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    |||||||| || || || |||||||||||||||||| |||||||||| ||||||    
T  38644636 tattccggagatttaaaaatagtcatatgtgtaggcatttgtactttgccgttt 38644583  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 4564791 - 4564835
Alignment:
Q  21 tattccggcgacttgaatatagtcatatgtgtaggcttttgtact 65  Q
    |||||||| || || ||||||||||||||||||||| ||||||||    
T  4564791 tattccggagatttaaatatagtcatatgtgtaggcatttgtact 4564835  T

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Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 32539017 - 32538981
Alignment:
Q  31 acttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||||||||| || |||||||||||||||||    
T  32539017 acttgaatatagtcatttgcgtaggcttttgtacttt 32538981  T

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Target: scaffold0340 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0340
Description:

Target: scaffold0340; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 11617 - 11566
Alignment:
Q  19 ggtattccggcgacttgaatatagtcatatgtgtaggcttttgtactttacc 70  Q
    ||||||| || ||||| ||||||||||||||||||||||||  |||||||||    
T  11617 ggtattctggagacttaaatatagtcatatgtgtaggctttaatactttacc 11566  T

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Target: scaffold0023 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 91244 - 91197
Alignment:
Q  20 gtattccggcgacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||||  |||||||||| ||||||| ||||||||||||||||||    
T  91244 gtattccggacacttgaatatggtcatatatgtaggcttttgtacttt 91197  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 74
Target Start/End: Complemental strand, 9482 - 9444
Alignment:
Q  36 aatatagtcatatgtgtaggcttttgtactttaccgttt 74  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  9482 aatatagtcatatgtgtaggcatttgtactttgccgttt 9444  T

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Target: scaffold0150 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 10159 - 10122
Alignment:
Q  30 gacttgaatatagtcatatgtgtaggcttttgtacttt 67  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  10159 gacttgaagatagtcatatgtgtaggattttgtacttt 10122  T

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