View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_low_28 (Length: 247)
Name: NF13049_low_28
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 39700327 - 39700560
Alignment:
| Q |
15 |
cagagaggatcacatatcatgaatggcataagtcattggcaacattataggccccaactaatcctccatcaaacttacatctcatgagtagtgaaggaag |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
39700327 |
cagagaggatcacataccatgaatggcataagtcattggcaacattataggccccaactaatcctccatcaaacttacatctcatgagtggtgaaggaag |
39700426 |
T |
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| Q |
115 |
aaaattcaagtcattaattagaatgtcacatcaaataattttttatgctgt--tnnnnnnnnncataattttttctcttttggcgagtctaaatgtggtt |
212 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||| | || |||||| ||| ||||||||| |||| |||||||| |
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| T |
39700427 |
aaaattcaagtcattcattagaatgtcacatcaaataattttttatgctgttataaaaaaaaacagaattttatct-ttttggcgaatctacatgtggtt |
39700525 |
T |
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| Q |
213 |
tgtttatcaaatatctttagtcgtcgtatctccat |
247 |
Q |
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||||||||||||||||||| | ||||||||||||| |
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| T |
39700526 |
tgtttatcaaatatctttacttgtcgtatctccat |
39700560 |
T |
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