View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_low_29 (Length: 246)
Name: NF13049_low_29
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 39847236 - 39847469
Alignment:
| Q |
1 |
atattttgtcattttcgcatcggttatgacttatgagtgaatgaaaggttagtaattcgcagttcggctaaagggtaagtaaaatttcattaaagattat |
100 |
Q |
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| T |
39847236 |
atattttgtcattttcgcatcggttat-------gagtgaatgaaaggttagtaattcgcagttcggctaaagggtaagtaaaatttcgttaaagattat |
39847328 |
T |
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| Q |
101 |
tccgactaaaataatgcttgcaagaaaacatgcttcaagttcactctttatcttatgctgtgacataattccccaaaactctaatgggatgctaaatatt |
200 |
Q |
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| T |
39847329 |
tccgactaaaataatgcttgcaagaaaacatgcttcaagttcactctttatcttatgctgtgacataattccccaaaactctaatgggatgctaaatatt |
39847428 |
T |
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| Q |
201 |
caattaaattgattagaagcatatttttacaacagaataat |
241 |
Q |
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| T |
39847429 |
caattaaattgattagaagcatatttttacaacagaataat |
39847469 |
T |
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