View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13049_low_3 (Length: 619)
Name: NF13049_low_3
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 331
Target Start/End: Complemental strand, 6240927 - 6240598
Alignment:
| Q |
1 |
aatttcctatctcctctctgatgaatgttctaaaattataagccaatctggatgcgaacgactttttcacgaatctacttgaaattgtgcttgatttatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| | | |
|
|
| T |
6240927 |
aatttcctatctcctctctgatgaatgttctaaaattataagccaatccggatgcgaacgactttttcacgaatctacttgaaattgtgattgatt-act |
6240829 |
T |
|
| Q |
101 |
tttagaagtaacattaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattatctactacatagtgctcatcaccatcccactct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
6240828 |
tttagaagtaacattaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattgtctactacatagtgctcatcaccatcccactct |
6240729 |
T |
|
| Q |
201 |
caatttttaggccaaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgacaacctatgcataat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6240728 |
caatttttaggccaaatatctcctagtgttctttaaagtttaaacttggttataaatatttacttgcatactttgagatcaatgacaacctatggataat |
6240629 |
T |
|
| Q |
301 |
catgcttcttaattggacaaatatgccgatc |
331 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
6240628 |
catgcttcttaattggacaaatatgccgatc |
6240598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 333 - 607
Target Start/End: Complemental strand, 6240573 - 6240299
Alignment:
| Q |
333 |
tctagttgtccctcagttggacattgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttc |
432 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6240573 |
tctagttgtccctcagtttgacaatgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttc |
6240474 |
T |
|
| Q |
433 |
catgaagcactagattcttagctaaatctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccat |
532 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6240473 |
catgaagcattagattcttagctaaatctatggcagatttttttatcaatgagaaatgcaataggcttgcatacttctatcttcatttctttcaacccat |
6240374 |
T |
|
| Q |
533 |
aatccaaccatattgcgtgacatgctgctaaataacttactataaactcagattcacaagttgagaccacaggtt |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6240373 |
aatccaaccatattgcgtgacatgctgctaaataacttactataaaatcagattcacaagttgagaccacaggtt |
6240299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 110 - 334
Target Start/End: Complemental strand, 6211890 - 6211659
Alignment:
| Q |
110 |
aacattaatgcttctaatattcttcca-------tctaacttttaagataaaaatgcttctattatctactacatagtgctcatcaccatcccactctca |
202 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6211890 |
aacattaatgcttctaatattcttccaagttccatctaacttctaagataaaaatgcttctattatctactacatagtgctcatcgccatcccactctca |
6211791 |
T |
|
| Q |
203 |
atttttaggccaaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgacaacctatgcataatca |
302 |
Q |
| |
|
|||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6211790 |
atttttaggccaaatacctcctagtgttgtttaaagtttacacttagttataaatatttacttgcatactttgagatcaatgataacctatgcataatca |
6211691 |
T |
|
| Q |
303 |
tgcttcttaattggacaaatatgccgatcttc |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
6211690 |
tgcttcttaattggacaaatatgccgatcttc |
6211659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 333 - 539
Target Start/End: Complemental strand, 6211637 - 6211432
Alignment:
| Q |
333 |
tctagttgtccctcagttggacattgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttc |
432 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6211637 |
tctagttgtcccttagttggacagtgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttctctcaatgtgtttgcttcttc |
6211538 |
T |
|
| Q |
433 |
catgaagcactagattcttagctaaatctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccat |
532 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6211537 |
catgaagcattagattcttagctaaatctat-gcagatttttttatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccat |
6211439 |
T |
|
| Q |
533 |
aatccaa |
539 |
Q |
| |
|
||||||| |
|
|
| T |
6211438 |
aatccaa |
6211432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 6212034 - 6211909
Alignment:
| Q |
1 |
aatttcctatctcctctctgatgaatgttctaaaattataagccaatctggatgcgaacgactttttcacgaatctacttgaaattgtgcttgatttatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| |||| ||||| |
|
|
| T |
6212034 |
aatttcctatctcctctctgatgaatgttctaaaattataagccaatccggatgcgaacaactttttcacgaatctacatgaaattgtgattga-ttatt |
6211936 |
T |
|
| Q |
101 |
tttagaagtaacattaatgcttctaat |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
6211935 |
tttagaagtaacattaatgcttctaat |
6211909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 136; Significance: 1e-70; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 19115715 - 19115992
Alignment:
| Q |
1 |
aatttcctatctcctctctgatgaatgttctaaaattataagccaatctggatgcgaacgactttt---tcacgaatctacttgaaattgtgcttgattt |
97 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||||||| ||| | | ||| ||| || | || ||||||||||||||||||||||| |||||| |
|
|
| T |
19115715 |
aatttcctatctcctctttgatgaagattctaaaattataagacaagccgaatgtgaaggaatattacttcacgaatctacttgaaattgtgattgattg |
19115814 |
T |
|
| Q |
98 |
atttttagaagtaacattaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattatctactacatagtgctcatcaccatcccac |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19115815 |
atttttagaagtaacattaatgcttctaatattcacccttctaacttttgagatgaaaatgcttctattatctactgcatagtgctcatcaccatcccac |
19115914 |
T |
|
| Q |
198 |
tctcaatttttaggccaaa-tatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatacttt |
274 |
Q |
| |
|
||||||||||||||||||| || |||||| ||||| || ||| ||||||| |||||||||||||||| |||||| |
|
|
| T |
19115915 |
tctcaatttttaggccaaattacctcctatgattctttaagttttgcacttaggaataaatatttacttgcgtacttt |
19115992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 335 - 598
Target Start/End: Original strand, 17507306 - 17507569
Alignment:
| Q |
335 |
tagttgtccctcagttggacattgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttcca |
434 |
Q |
| |
|
||||||| |||| ||| ||| ||||||| ||||| |||||||| |||||||||||||| | ||||||||| || ||| |||||||||||||||| || |
|
|
| T |
17507306 |
tagttgttcctctattgaacaatgtatgaccttaaacatttctttgttcacttgttctctaataaagtgaaattttgccttaatgtgtttgcttctttca |
17507405 |
T |
|
| Q |
435 |
tgaag-cactagattcttagctaaatctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccata |
533 |
Q |
| |
|
|||| |||| ||||||| ||||||||||| ||| | | |||||| ||||||||||||||||||||||||||||||| ||| |||||| | | |
|
|
| T |
17507406 |
tgaaaacacttgattctttgctaaatctatagcaaatttattgtt-aatgaggaatgcaataggcttgcaaacttctatcttcagttccttcaacacgga |
17507504 |
T |
|
| Q |
534 |
atccaaccatattgcgtgacatgctgctaaataacttactataaactcagattcacaagttgaga |
598 |
Q |
| |
|
||||| | ||||||| ||||||||||||||| ||| | ||||| | || ||||| || ||||||| |
|
|
| T |
17507505 |
atccagcaatattgcttgacatgctgctaaacaacctgctatatattctgattctcatgttgaga |
17507569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 335 - 589
Target Start/End: Original strand, 23427927 - 23428179
Alignment:
| Q |
335 |
tagttgtccctcagttggacattgtatgatcttaagcatttcttcattcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttcca |
434 |
Q |
| |
|
||||||| ||||| | ||||| ||||||| ||||||||||| || |||||||||||||||| | ||||||||| || |||| |||||||| ||||| || |
|
|
| T |
23427927 |
tagttgttcctcaatgggacaatgtatgaccttaagcatttatttattcacttgttctctgataaagtgaaatattgcctctatgtgtttacttctgaca |
23428026 |
T |
|
| Q |
435 |
tgaagcactagattcttagctaaatctatggcagannnnnnnatcaatgagaaatgcaataggcttgcaaacttctatcttcatttctttcaacccataa |
534 |
Q |
| |
|
|| | |||| | || |||||||||||||| ||| | ||||| ||| || ||| || ||||||||||||||||||||| |||| | ||| ||||| |
|
|
| T |
23428027 |
tgcaacacttggtttttagctaaatctatagcata--ttgttatcaacgagcaacgcagtaagcttgcaaacttctatcttcagttctcttaacacataa |
23428124 |
T |
|
| Q |
535 |
tccaaccatattgcgtgacatgctgctaaataacttactataaactcagattcac |
589 |
Q |
| |
|
||||||||||||| |||||||| ||||| ||| |||| || ||||| |||||| |
|
|
| T |
23428125 |
tccaaccatattgtttgacatgcagctaagcaacctactttatactcatattcac |
23428179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 381 - 460
Target Start/End: Complemental strand, 1833998 - 1833919
Alignment:
| Q |
381 |
ttcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagctaaatc |
460 |
Q |
| |
|
||||| |||||||| | |||||||||||| |||||||||||||| ||||| |||| | |||| |||||||||| ||||| |
|
|
| T |
1833998 |
ttcacatgttctcttataaagtgaaatcttgcctcaatgtgtttgtttctttcatgcaacactggattcttagccaaatc |
1833919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 130; Significance: 5e-67; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 8 - 292
Target Start/End: Complemental strand, 19610268 - 19609982
Alignment:
| Q |
8 |
tatctcctctctgatgaatgttctaaaattataagccaatctggatgcgaacgactttttcacgaatctacttgaaattgtgcttgatttatttttagaa |
107 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||| ||| || |||||||| || | | |||| ||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
19610268 |
tatctcctctctgatgaagattctgaaattataaggcaagctagatgcgaaggattatgtcacaaatctacttaaaattgtgattgatttatttttagaa |
19610169 |
T |
|
| Q |
108 |
gtaacattaatgcttctaatattcttccatctaacttttaagataaaaatgcttctattatctactacatagtgct---catcaccatcccactctcaat |
204 |
Q |
| |
|
|||||||| ||| ||||||||||| | |||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||||| |
|
|
| T |
19610168 |
gtaacattgatgtttctaatattccctcttctaacttttgagataaaaatgcttctattatctactgcatagtgctcaacatcatcatcccaatctcaat |
19610069 |
T |
|
| Q |
205 |
ttttaggccaaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgacaaccta |
292 |
Q |
| |
|
||||||||| |||| ||| ||| ||| || || |||||||||||||||||||||||||||||||||||| | || ||||||||||| |
|
|
| T |
19610068 |
ttttaggcctaatacctcttag-gttttttaagttttacacttagttataaatatttacttgcatacttttaaattgatgacaaccta |
19609982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 487 - 596
Target Start/End: Complemental strand, 30066986 - 30066877
Alignment:
| Q |
487 |
aatgcaataggcttgcaaacttctatcttcatttctttcaacccataatccaaccatattgcgtgacatgctgctaaataacttactataaactcagatt |
586 |
Q |
| |
|
||||||||||||||||| | ||| || |||| ||| || ||| ||||||| | ||||| ||| ||||||||||||||| | | ||| || ||||||||| |
|
|
| T |
30066986 |
aatgcaataggcttgcagatttcaatattcagttcctttaacacataatctagccatactgcttgacatgctgctaaacaccctacaatgtactcagatt |
30066887 |
T |
|
| Q |
587 |
cacaagttga |
596 |
Q |
| |
|
|||||||||| |
|
|
| T |
30066886 |
cacaagttga |
30066877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 463
Target Start/End: Original strand, 15489886 - 15489950
Alignment:
| Q |
399 |
aagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagctaaatctat |
463 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||| | |||| |||||||||||||||||| |
|
|
| T |
15489886 |
aagtgaaatattgtctcaatgtgtttgcttcttccatgcaacactgaattcttagctaaatctat |
15489950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 16943892 - 16943965
Alignment:
| Q |
381 |
ttcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagc |
454 |
Q |
| |
|
||||| || |||||| | |||||||| ||| ||| |||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
16943892 |
ttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatgcaacactagattcttagc |
16943965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 17014557 - 17014630
Alignment:
| Q |
381 |
ttcacttgttctctggtgaagtgaaatcttccctcaatgtgtttgcttcttccatgaagcactagattcttagc |
454 |
Q |
| |
|
||||| || |||||| | |||||||| ||| ||| |||||||||||||| ||||| | ||||||||||||||| |
|
|
| T |
17014557 |
ttcacctgctctctgataaagtgaaaccttgtctctatgtgtttgcttctaccatgcaacactagattcttagc |
17014630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 511 - 547
Target Start/End: Complemental strand, 24650708 - 24650672
Alignment:
| Q |
511 |
atcttcatttctttcaacccataatccaaccatattg |
547 |
Q |
| |
|
|||||||||||||||||| |||||||||||| ||||| |
|
|
| T |
24650708 |
atcttcatttctttcaacacataatccaaccgtattg |
24650672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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