View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13049_low_5 (Length: 506)
Name: NF13049_low_5
Description: NF13049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13049_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 495
Target Start/End: Complemental strand, 42306890 - 42306414
Alignment:
| Q |
18 |
catgttagaggggagttcatcgagtacgttttggtgtcgtagttgacaaaccttttaggctatcgctgttaatgcatcgtgactttgagggatgattagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
42306890 |
catgttagaggggagttcatcgagtacgttttggcatcgtagttgacaaaccttttaggctatcgctgttaatgcattgtgactttgagggatgattagt |
42306791 |
T |
|
| Q |
118 |
aatctagtccttttaagtttattatatataatctttgtaacctttattatatggtattctattaaaattctaatctcctttgtgattctttcttcttgat |
217 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| |
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| T |
42306790 |
aatctagtccttttaagtttattatatataatctttgtaacctttattatatggtattctgttaaaattctaatctcctttgttattctctcttcttgat |
42306691 |
T |
|
| Q |
218 |
tctctatattgttaacaaccagaattgaaaataatttctagtattaaacttcgtgtatcttgaagaatattcactaaattctctatattattannnnnnn |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42306690 |
tctctatattgttaacaaccagaattgaaaataatttctagtattaaacttagtgtatcttgaagaatattcactaaattctctatattatta-tttttt |
42306592 |
T |
|
| Q |
318 |
nnctaattttctcaataaaattttcataattgagtcactgcacagttaatatttcttccacatttctttctcatatcttgaagaatctggctgaaaagta |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
42306591 |
ttctaattttctcaataaaattttcataattgagtcactgcacagttaatatttcttccacatttctttctcatatcttgaagaatctggctgaagagta |
42306492 |
T |
|
| Q |
418 |
tgatagtttaggagcgttcagaaccgcagtagccgagtaacgcaagatggattagaatcttcaggttgtagcttctgt |
495 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42306491 |
tgatagtttaggagcgttcagaaccgcagtagccgagtaacgcaagatggattagaatcttcaggttgtagcttctgt |
42306414 |
T |
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