View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_104 (Length: 257)
Name: NF1304_high_104
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_104 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 10814923 - 10815148
Alignment:
| Q |
1 |
cataacgcgttatctattacaaggggcaatgagaaaacaatgagataaatacgattactgattattgtttctctgcaactttcaaattgttctaatatga |
100 |
Q |
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| T |
10814923 |
cataacgcgttatctattacaaggggcaatgagaaaacaatgagataaatacgattactgattattgtttctctgcaactttcaaattgttctaatatga |
10815022 |
T |
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| Q |
101 |
aaaatccatggggaatggggatcgtgtagaccatataaacagagaagagagtagtagtacgataattactaatatggaggagcatatataacaacacatt |
200 |
Q |
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| T |
10815023 |
aaaatccatggggaatggggatcgtgtagaccatataaacagagaagagagtagt--tacgataattactaatatggaggagcatatataacaacacatt |
10815120 |
T |
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| Q |
201 |
ctgaaacatattagatttgtacactcat |
228 |
Q |
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| T |
10815121 |
ctgaaacatattagatttgtacactcat |
10815148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 2e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 13309894 - 13310073
Alignment:
| Q |
11 |
tatctattacaaggggcaatgagaaaacaatgagataaatacgattactgattattgtttctctgcaactttcaaattgttctaatatgaaaaatccatg |
110 |
Q |
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| T |
13309894 |
tatctatttcaaggggcaatgagaaaacaatgagataaatacgattactggttattgtttctctgcaactttcaaattgttctaatatgaaaaatccatg |
13309993 |
T |
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| Q |
111 |
gggaatggggatcgtgtagaccatataaacagagaagagagtagtagtacgataattactaatatggaggagcatatata |
190 |
Q |
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| T |
13309994 |
gggaatggggatcgtgtagaccatataaacagagaagagagtagtagtacgataattactaatatggaggagcatatata |
13310073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 225
Target Start/End: Original strand, 13310121 - 13310162
Alignment:
| Q |
184 |
atatataacaacacattctgaaacatattagatttgtacact |
225 |
Q |
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| T |
13310121 |
atatataacaacacattctaaaacatataagatttgtacact |
13310162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 225
Target Start/End: Complemental strand, 147690 - 147648
Alignment:
| Q |
183 |
catatataacaacacattctgaaacatattagatttgtacact |
225 |
Q |
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| T |
147690 |
catatataacaacacattctgaaacatattagatttgtacact |
147648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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