View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1304_high_105 (Length: 257)
Name: NF1304_high_105
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_105 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 29 - 257
Target Start/End: Original strand, 44856950 - 44857178
Alignment:
| Q |
29 |
acaacgttgtcattgtcttgaacatgatgatgaaaattcttctgagcaacgacattagaagaaccaatgttacattcttcaagaccagatttcaaagtgt |
128 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44856950 |
acaacgttgtcattgtcttgaacatgatgatgaaaattcttctgagcaacgacattagaagaaccaatgttacattcttcaagaccagatttcaaagtgt |
44857049 |
T |
|
| Q |
129 |
gacaataaatttcaagcttgttcaactttttctctaactctgacattgaattcatgagccttgaagcttcttgaagagcttcatctctttttcttgtggc |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44857050 |
gacaataaatttcaagcttgttcaactttttctctaactctgacattgaattcatgagccttgaagcttcttgaagagcttcatctctttttcttgtggc |
44857149 |
T |
|
| Q |
229 |
atgaacaagtttgtgagaaagttctgcca |
257 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
44857150 |
atgaacaagtttgtgagaaagttctgcca |
44857178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University