View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_11 (Length: 635)
Name: NF1304_high_11
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 155 - 621
Target Start/End: Complemental strand, 13447885 - 13447419
Alignment:
| Q |
155 |
tcaaagaagtaacatttagctactctggcagatttaacatgaattttcgaatagtttaaacttaattgttttgattcaatttttggtgtgtacgtggcta |
254 |
Q |
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| T |
13447885 |
tcaatgaagtaacatttagctactctggcagatttaacatgaattttcgaatagttttc-cttaattgttttgattcaatttttggtgtgtacgtggcta |
13447787 |
T |
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| Q |
255 |
ttctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtcaacacttctgtcagtctgacattgctgttgtttacag |
354 |
Q |
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| T |
13447786 |
ttctaacttcttaatgtgtttttgcatttattttaatttttcaactgcgagagtgtttatgtcaacacttctgtcagtctgacattgccgttgtttacag |
13447687 |
T |
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| Q |
355 |
tcgaatgaaatggaagaatcctgtaaagctggtttctgtactttaaatctctagattttgtgggatcctgtcnnnnnnnnnnnnnnnngaccgaagatta |
454 |
Q |
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| T |
13447686 |
tcgaatgaaatggaagaatcctgtaaagctggttcctgtactttaaatctctagattttgtgggatcctgtctgtttctttttcttttgaccgaagatta |
13447587 |
T |
|
| Q |
455 |
gcccctaatttgtttcattcgctatacataccaagtttggttcgaatgcatttctttcatgtcttgttttcaatcatctacaatctgtgcaccaacactg |
554 |
Q |
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| T |
13447586 |
gcccctaatttgtttcattcgctatacataccaagtttggttcgaatgcatttctttcatgtctggttttcaatcatctacaatctgtgcaccaacactg |
13447487 |
T |
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| Q |
555 |
ttgta-ttttttcgatggatctcttgtcttgttggtgatccattggtgtcgtcgttgaggcgtctgtc |
621 |
Q |
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| T |
13447486 |
ttgtatttttttcgatggatctcttgtcgtgttgatgatccattggtgtcgtcgttgaggcgtctgtc |
13447419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 235 - 298
Target Start/End: Complemental strand, 13454249 - 13454185
Alignment:
| Q |
235 |
ttttggtgtgtacgtggctattctaacttcttaatgtgtttttgcatttatttt-aatttttcaa |
298 |
Q |
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| T |
13454249 |
ttttgttgtgtacgtggttcttctaacttcttaatgtgttttcgcatttattttcaatttttcaa |
13454185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 8699359 - 8699280
Alignment:
| Q |
59 |
atcacaactgtctttacagaaaactatagtgat---atagaaggacaaatttggctactacattgtatcttttataagct |
135 |
Q |
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| T |
8699359 |
atcacaattgtctttacagaaaactaaagtggtgagatggaaggacaaatttggctactactttgtatcttttataagct |
8699280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 8707623 - 8707569
Alignment:
| Q |
10 |
taagaccctaaattgatcgtcaaattaatccctcaaacatttaaatgtcatcaca |
64 |
Q |
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| T |
8707623 |
taagaccctaaattgatcgccaaattaatcaaacaaacatttaaatgtcatcaca |
8707569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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