View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_111 (Length: 253)
Name: NF1304_high_111
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_111 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 49003013 - 49002770
Alignment:
| Q |
1 |
aggggcagagtttaaggccaattcaagaacatagcgaagatgtgtaggtgacaagaatggtgttgtagcttaaacattttcttttacnnnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49003013 |
aggggcagagtttaaggccaattcaagaacatagcgaagatgtgtaggtgacaagaatggtgttgtagcttaaacattttcttttacctctctctctctc |
49002914 |
T |
|
| Q |
101 |
--aatgtttaaattctaaaaaatttaaccaaaacaatttagtttgtttgccagtaacttagtccctttttaatcattgtaaaagactaaattattgcctt |
198 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49002913 |
tcaatgtttaaattctaaaaaattgaaccaaaacaatttagtttgtttgcctgtaacttagtccctttttaatcattgtaaaagactaaattattgcctt |
49002814 |
T |
|
| Q |
199 |
ctaattattgttatacaactaattgtcttttttacgtggttcat |
242 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49002813 |
ttaattattgttatacaactaattgtcttttttacgtggttcat |
49002770 |
T |
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