View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1304_high_113 (Length: 251)

Name: NF1304_high_113
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1304_high_113
NF1304_high_113
[»] chr3 (13 HSPs)
chr3 (4-149)||(45249353-45249498)
chr3 (6-150)||(48993341-48993484)
chr3 (10-148)||(8108192-8108329)
chr3 (43-149)||(27213968-27214074)
chr3 (4-143)||(6488774-6488913)
chr3 (80-149)||(31580363-31580432)
chr3 (5-130)||(39611627-39611751)
chr3 (77-150)||(44455067-44455140)
chr3 (5-129)||(23919141-23919265)
chr3 (11-133)||(53466229-53466351)
chr3 (64-150)||(51369476-51369561)
chr3 (79-131)||(52525508-52525560)
chr3 (12-112)||(54260882-54260982)
[»] chr2 (18 HSPs)
chr2 (5-150)||(36903940-36904085)
chr2 (12-149)||(39791511-39791648)
chr2 (11-150)||(38402515-38402654)
chr2 (4-149)||(223884-224029)
chr2 (16-137)||(19955069-19955190)
chr2 (5-112)||(9047594-9047701)
chr2 (7-150)||(15335812-15335955)
chr2 (5-149)||(3002364-3002503)
chr2 (12-129)||(4428778-4428895)
chr2 (77-149)||(9559629-9559701)
chr2 (76-159)||(37743769-37743852)
chr2 (60-150)||(2854409-2854499)
chr2 (76-157)||(879442-879523)
chr2 (69-130)||(41283336-41283397)
chr2 (12-130)||(6563077-6563193)
chr2 (77-150)||(13490819-13490892)
chr2 (12-149)||(37331765-37331902)
chr2 (76-112)||(44153213-44153249)
[»] chr7 (16 HSPs)
chr7 (5-149)||(10624925-10625069)
chr7 (6-149)||(28514617-28514760)
chr7 (4-145)||(48488412-48488553)
chr7 (5-149)||(31191352-31191495)
chr7 (11-138)||(37869719-37869845)
chr7 (12-130)||(28646616-28646734)
chr7 (11-150)||(25119942-25120081)
chr7 (5-149)||(40198952-40199097)
chr7 (77-145)||(46515459-46515527)
chr7 (59-131)||(1111747-1111819)
chr7 (4-149)||(45662228-45662371)
chr7 (36-149)||(19086284-19086397)
chr7 (39-148)||(23247756-23247864)
chr7 (102-150)||(29555807-29555855)
chr7 (78-138)||(39158653-39158713)
chr7 (61-129)||(43079390-43079458)
[»] chr6 (7 HSPs)
chr6 (5-149)||(6100658-6100802)
chr6 (5-149)||(32147863-32148007)
chr6 (11-150)||(7984547-7984686)
chr6 (60-150)||(40025-40115)
chr6 (12-149)||(33134189-33134327)
chr6 (76-144)||(31631890-31631958)
chr6 (79-145)||(24120497-24120562)
[»] chr8 (13 HSPs)
chr8 (5-149)||(13018467-13018611)
chr8 (5-145)||(12978228-12978368)
chr8 (5-149)||(38573270-38573414)
chr8 (59-149)||(24999437-24999527)
chr8 (9-145)||(36642698-36642834)
chr8 (7-150)||(13177751-13177894)
chr8 (5-149)||(23518178-23518322)
chr8 (11-114)||(7642613-7642716)
chr8 (5-149)||(12763258-12763398)
chr8 (77-150)||(1090003-1090076)
chr8 (100-149)||(44395640-44395689)
chr8 (79-152)||(45079352-45079425)
chr8 (4-48)||(33015581-33015625)
[»] chr4 (29 HSPs)
chr4 (5-130)||(41735424-41735549)
chr4 (5-149)||(41621891-41622035)
chr4 (4-149)||(43142033-43142175)
chr4 (5-138)||(26876073-26876206)
chr4 (5-149)||(3121037-3121180)
chr4 (5-149)||(52270443-52270587)
chr4 (26-149)||(2168432-2168555)
chr4 (4-139)||(25231499-25231634)
chr4 (6-149)||(31861547-31861689)
chr4 (25-145)||(8680518-8680637)
chr4 (1-149)||(9093571-9093719)
chr4 (4-131)||(37624824-37624951)
chr4 (6-149)||(16958357-16958499)
chr4 (5-149)||(35808667-35808813)
chr4 (39-149)||(42183376-42183486)
chr4 (5-150)||(46737410-46737556)
chr4 (11-138)||(43594969-43595095)
chr4 (77-157)||(29235595-29235675)
chr4 (3-142)||(55969860-55969999)
chr4 (77-167)||(8291022-8291112)
chr4 (60-150)||(29927284-29927374)
chr4 (77-147)||(35798964-35799034)
chr4 (66-142)||(49105921-49105996)
chr4 (79-138)||(34236717-34236776)
chr4 (60-150)||(4452825-4452915)
chr4 (79-137)||(6917302-6917360)
chr4 (77-145)||(15825168-15825236)
chr4 (83-131)||(45654775-45654823)
chr4 (60-131)||(56040332-56040401)
[»] chr1 (19 HSPs)
chr1 (9-149)||(42410194-42410334)
chr1 (5-150)||(51049798-51049943)
chr1 (5-152)||(3831376-3831522)
chr1 (9-150)||(894757-894898)
chr1 (6-149)||(36563832-36563973)
chr1 (11-133)||(5892666-5892788)
chr1 (79-157)||(11818132-11818210)
chr1 (10-137)||(34038797-34038921)
chr1 (11-112)||(38067712-38067813)
chr1 (60-150)||(3527734-3527824)
chr1 (12-113)||(13984245-13984346)
chr1 (5-112)||(10040419-10040524)
chr1 (4-110)||(1795816-1795922)
chr1 (78-135)||(32213506-32213563)
chr1 (27-148)||(38788655-38788776)
chr1 (5-72)||(13208059-13208126)
chr1 (76-131)||(32815235-32815290)
chr1 (76-150)||(41834827-41834901)
chr1 (77-150)||(17922357-17922430)
[»] chr5 (20 HSPs)
chr5 (5-149)||(34338884-34339028)
chr5 (5-149)||(15476866-15477010)
chr5 (61-150)||(32292268-32292357)
chr5 (60-150)||(36487191-36487281)
chr5 (5-131)||(606676-606802)
chr5 (87-149)||(10285332-10285393)
chr5 (77-150)||(16054437-16054510)
chr5 (10-150)||(25713330-25713469)
chr5 (5-111)||(8713796-8713901)
chr5 (9-150)||(1088209-1088350)
chr5 (59-143)||(14662965-14663049)
chr5 (76-132)||(31006329-31006385)
chr5 (11-126)||(29045332-29045447)
chr5 (60-157)||(3135649-3135746)
chr5 (61-157)||(40220334-40220430)
chr5 (77-137)||(39351091-39351151)
chr5 (87-150)||(1056556-1056619)
chr5 (77-131)||(7248418-7248472)
chr5 (77-137)||(565567-565627)
chr5 (36-148)||(13138528-13138639)
[»] scaffold0002 (1 HSPs)
scaffold0002 (12-137)||(433877-434000)
[»] scaffold0020 (1 HSPs)
scaffold0020 (11-102)||(171589-171680)
[»] scaffold0004 (1 HSPs)
scaffold0004 (77-150)||(97848-97921)


Alignment Details
Target: chr3 (Bit Score: 94; Significance: 5e-46; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 45249353 - 45249498
Alignment:
Q  4 ttaagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataa 103  Q
    |||||||||||||||||||| ||||||||| ||| |||||||||||||||| |  |||||||||||||| ||||||||||||||||||||||| ||||||    
T  45249353 ttaagggcattgtttaagcatataaaagtagcaacttttgcattggaaattgtacggttatgactttaacaaatgtttgacttgtattttcaagacataa 45249452  T
Q  104 tttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||| || |||| |||||||||||||||||  |||||||||    
T  45249453 tttctttttgtgggttccttaaacaatgcccttagggcacttgtta 45249498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 48993484 - 48993341
Alignment:
Q  6 aagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatt 105  Q
    ||||||||||||||||||  |||||||| ||| |||| ||||||||||| | | ||| ||||||||| ||  ||||||||| ||||||||| ||||||||    
T  48993484 aagggcattgtttaagcatctaaaagtagcaactttttcattggaaattgt-acgttgtgactttaacaagggtttgacttttattttcaagacataatt 48993386  T
Q  106 tctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    || | || || |||| |||||||||||||||||  ||||||||||    
T  48993385 tcctcttgtgggttccttaaacaatgcccttagggcacttgttag 48993341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 8108329 - 8108192
Alignment:
Q  10 gcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctt 109  Q
    ||||||||||||||  |||||||| ||| |||||||||||||||| |  |||||| |||| || || |||| ||||| |||||||||  |||||||||||    
T  8108329 gcattgtttaagcatctaaaagtaacaacttttgcattggaaattgtacggttataacttcaacaagtgtt-gacttatattttcaaggcataatttctt 8108231  T
Q  110 tttatgagttctttaaacaatgcccttagaacacttgtt 148  Q
    ||| || |||| |||||||||| ||||||  ||||||||    
T  8108230 tttttgtgttccttaaacaatgtccttagggcacttgtt 8108192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 43 - 149
Target Start/End: Original strand, 27213968 - 27214074
Alignment:
Q  43 gcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaaca 142  Q
    |||||||||||| |   ||||||||||| | | |||||||||||||||||| || ||| | ||||||||| || |||| |||||||||| ||||||||||    
T  27213968 gcattggaaattgtatagttatgacttttacatatgtttgacttgtatttttaagacaaagtttctttttgtgtgttccttaaacaatgtccttagaaca 27214067  T
Q  143 cttgtta 149  Q
    |||||||    
T  27214068 cttgtta 27214074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 143
Target Start/End: Complemental strand, 6488913 - 6488774
Alignment:
Q  4 ttaagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataa 103  Q
    ||||||||||||||||||||  |||||||| ||| |||||||||| ||||| |    |||||||||||| || ||||  ||||||||||| || | ||||    
T  6488913 ttaagggcattgtttaagcatttaaaagtagcaacttttgcattgaaaattgtactattatgactttaacaagtgttgtacttgtatttttaagatataa 6488814  T
Q  104 tttctttttatgagttctttaaacaatgcccttagaacac 143  Q
    | ||||||| |  |||| ||||||||||||| ||| ||||    
T  6488813 tctctttttgtaggttccttaaacaatgcccgtaggacac 6488774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 31580363 - 31580432
Alignment:
Q  80 ttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||| ||||||||||||||||||| ||||| || |||||||||||||| ||||||  ||||||||||    
T  31580363 ttgacttatattttcaaaacataatttttttttgtgggttctttaaacaatacccttaagacacttgtta 31580432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 39611751 - 39611627
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||| ||||||||||||||  | |||||| ||||||||||| || ||||| |   ||||||||||||| | |||||||| ||||||||||||  | ||||    
T  39611751 taagagcattgtttaagcattttaaagtagcaatttttgcactgaaaattgtacagttatgactttaacatatgtttgatttgtattttcaatgcgtaat 39611652  T
Q  105 ttctttttatgagttctttaaacaat 130  Q
    || ||||||||||||  |||||||||    
T  39611651 tt-tttttatgagtttcttaaacaat 39611627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 44455140 - 44455067
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||||||||||||||||||| ||| ||||||||| | ||||||  |||||||| | ||||||||||||||||||    
T  44455140 tgtttgacttgtattttcaagacaaaatttctttctgtgagtttcttaaacaacgtccttagaacacttgttag 44455067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 129
Target Start/End: Complemental strand, 23919265 - 23919141
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    ||||||||||||||||||   |||||||| ||| ||||| |||||||||| |    |||| |||| || || |||||||| | ||||||| | |||||||    
T  23919265 taagggcattgtttaagcctctaaaagtaacaacttttgtattggaaattgtacaattataacttcaacaagtgtttgacatatattttcgagacataat 23919166  T
Q  105 ttctttttatgagttctttaaacaa 129  Q
    ||||||||||| |||| ||||||||    
T  23919165 ttctttttatgggttccttaaacaa 23919141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 53466229 - 53466351
Alignment:
Q  11 cattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttcttt 110  Q
    ||||||||||| |  |||||| | ||| |||||||||| ||||| |  | |||| |||| || || |||||||||| |||||| ||| ||||||||||||    
T  53466229 cattgtttaagtatctaaaagaaacaacttttgcattgaaaattgtacgattataacttcaataagtgtttgacttatatttttaaagcataatttcttt 53466328  T
Q  111 ttatgagttctttaaacaatgcc 133  Q
    ||||  |||| ||||||||||||    
T  53466329 ttataggttccttaaacaatgcc 53466351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 150
Target Start/End: Complemental strand, 51369561 - 51369476
Alignment:
Q  64 tgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||||||| |||||| ||||| || ||||||||| ||| ||||| ||||| ||||||  |||||||||| | ||||||||||||||||    
T  51369561 tgacttttaaaaatatttgatttatattttcaagaca-aatttttttttgtgagtttattaaacaatgtctttagaacacttgttag 51369476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 52525508 - 52525560
Alignment:
Q  79 tttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatg 131  Q
    |||||||| |||||| |||||| |||||||||||||| |||| ||||| ||||    
T  52525508 tttgacttatatttttaaaacaaaatttctttttatgggttccttaaataatg 52525560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 54260882 - 54260982
Alignment:
Q  12 attgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttt 111  Q
    ||||||||| ||  ||||||||  ||||||||||||  |||||||    |||||| ||||| |  | |||||||| ||||||||||| ||||||||||||    
T  54260882 attgtttaatcatctaaaagtagtaatttttgcattaaaaattatgtatttatgagtttaacaggtatttgacttttattttcaaaatataatttctttt 54260981  T
Q  112 t 112  Q
    |    
T  54260982 t 54260982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 36904085 - 36903940
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||||||||||||||||  |||||||| ||| |||||||||||||||| |  |||||||||||||| || |||||||||||||||||||| |||||||    
T  36904085 taagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttatgactttaataagtgtttgacttgtattttcaagacataat 36903986  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||||||| || |||| |||||||||||||||||  ||||||||||    
T  36903985 ttctttttgtgggttccttaaacaatgcccttagggcacttgttag 36903940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 39791648 - 39791511
Alignment:
Q  12 attgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttt 111  Q
    |||||||||||| ||||||||| ||||||||  ||| |||||| |  | | |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39791648 attgtttaagcatataaaagtagcaatttttatattagaaattgtacgataatgactttaacaaatgtttgacttgtattttcaaaacataatttctttt 39791549  T
Q  112 tatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    | ||  ||||||||||||| ||||||| ||||||||||    
T  39791548 tgtggattctttaaacaatacccttaggacacttgtta 39791511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 38402654 - 38402515
Alignment:
Q  11 cattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttcttt 110  Q
    ||||||||| |||  |||||||| ||| ||||| |||||||||| |  |||||||||||||| || ||||| ||||||||||||||||||||||||||||    
T  38402654 cattgtttaggcatctaaaagtagcaacttttgtattggaaattgtacggttatgactttaagaagtgtttaacttgtattttcaaaacataatttcttt 38402555  T
Q  111 ttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||||  ||| ||||||||||||||||  |||||||||||    
T  38402554 ttatggattccttaaacaatgcccttatgacacttgttag 38402515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 223884 - 224029
Alignment:
Q  4 ttaagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataa 103  Q
    ||||| ||||||||||||||  |||||||| |||||||||||||| ||||| |  |||||| |||| || || |||||||||| |||||||||   ||||    
T  223884 ttaagagcattgtttaagcatctaaaagtagcaatttttgcattgaaaattgtacggttataacttcaataagtgtttgacttatattttcaaggtataa 223983  T
Q  104 tttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||||||||||| |||||||||||  ||||  |||||||||    
T  223984 tttctttttatgagttccttaaacaatgcatttagggcacttgtta 224029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 137
Target Start/End: Complemental strand, 19955190 - 19955069
Alignment:
Q  16 tttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatg 115  Q
    |||||||| ||||||||| ||| ||||  ||||||||||||  | |||||||||||| || ||||||| |||||||||||||||||||||||||||| ||    
T  19955190 tttaagcatataaaagtagcaacttttttattggaaattatatgattatgactttaacaagtgtttgatttgtattttcaaaacataatttctttttgtg 19955091  T
Q  116 agttctttaaacaatgccctta 137  Q
     |||| ||||||||||| ||||    
T  19955090 ggttccttaaacaatgctctta 19955069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 9047594 - 9047701
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||| ||||||||||| || ||||||||| ||| |||| ||||| ||||| |  |||||||||||||| || ||||||||||||||||||||||||||||    
T  9047594 taagagcattgtttaatcatataaaagtaacaacttttacattgaaaattgtacggttatgactttaacaagtgtttgacttgtattttcaaaacataat 9047693  T
Q  105 ttcttttt 112  Q
    ||||||||    
T  9047694 ttcttttt 9047701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 7 - 150
Target Start/End: Complemental strand, 15335955 - 15335812
Alignment:
Q  7 agggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataattt 106  Q
    |||||||||||||||||  |||||||| ||||||||||||| |||||| |    |||||||||||| | ||||||||||||||||||||| ||| || ||    
T  15335955 agggcattgtttaagcatctaaaagtagcaatttttgcatttgaaattgtacaattatgactttaacatatgtttgacttgtattttcaagacaaaaatt 15335856  T
Q  107 ctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    || ||| || |||| ||||||||||||||| |  ||||||||||    
T  15335855 ctctttgtgggttccttaaacaatgcccttggggcacttgttag 15335812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 3002364 - 3002503
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaattttt-gcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataa 103  Q
    |||||| |||||||||||| ||||||||| |||||||| |||||| |||||||      |  ||||||| |||||||||||||||||||| || | ||||    
T  3002364 taagggaattgtttaagcatataaaagtagcaattttttgcattgaaaattat------acaactttaacaaatgtttgacttgtatttttaagatataa 3002457  T
Q  104 tttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||| || ||||||||||||||||||| || | ||||||||    
T  3002458 tttctttttgtgggttctttaaacaatgccctcaggagacttgtta 3002503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 12 - 129
Target Start/End: Complemental strand, 4428895 - 4428778
Alignment:
Q  12 attgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttt 111  Q
    ||||||||||||  |||  ||| ||| |||| ||||| |||||||  |||||||||||||| |||| |||||||| ||| ||||| ||||||||||||||    
T  4428895 attgtttaagcatctaattgtagcaacttttacattgaaaattatacggttatgactttaataaatatttgacttatatcttcaagacataatttctttt 4428796  T
Q  112 tatgagttctttaaacaa 129  Q
    ||||  ||| ||||||||    
T  4428795 tatggattccttaaacaa 4428778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 9559701 - 9559629
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    |||||||||||||||||||||||| ||||| ||||| ||||| | ||||||||| ||||||  ||||||||||    
T  9559701 tgtttgacttgtattttcaaaacaaaatttatttttgtgagtaccttaaacaatacccttaagacacttgtta 9559629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 159
Target Start/End: Original strand, 37743769 - 37743852
Alignment:
Q  76 atgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttagtatgacctt 159  Q
    |||||| |||||||||||| ||||| |||||||||| |||| || |||||||||| | ||| ||||||||||||| | ||||||    
T  37743769 atgtttaacttgtattttcgaaacaaaatttcttttgatgaattttttaaacaatactcttggaacacttgttagcaagacctt 37743852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 2854409 - 2854499
Alignment:
Q  60 gttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||||||||||| | | |||||| |||||||||||||| ||| ||||||||| | ||  ||| |||||| ||||||||||  ||||||||||    
T  2854409 gttatgacttttagatatgtttaacttgtattttcaagacaaaatttctttatgtggattccttaaacgatgcccttagggcacttgttag 2854499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 879523 - 879442
Alignment:
Q  76 atgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttagtatgacc 157  Q
    ||||||||||| | ||||||||| |  |||||| ||||||  ||  ||||||||||||||||| ||||||||||||| ||||    
T  879523 atgtttgacttatgttttcaaaagaatatttctatttatggtttgcttaaacaatgcccttaggacacttgttagtaagacc 879442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 41283397 - 41283336
Alignment:
Q  69 ttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaat 130  Q
    |||| |||| |||||||| |||||||||   ||||||||||||||||||||| |||||||||    
T  41283397 ttaacaaatatttgacttatattttcaaggtataatttctttttatgagttccttaaacaat 41283336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 6563193 - 6563077
Alignment:
Q  12 attgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttt 111  Q
    |||||||||||| |||||||||  | |||||| |||| ||||| |  |||||| | || || || ||||||| || |||||| |||| ||||||| ||||    
T  6563193 attgtttaagcatataaaagta--actttttgtattgtaaattgtgcggttataatttcaataagtgtttgatttatatttttaaaatataatttttttt 6563096  T
Q  112 tatgagttctttaaacaat 130  Q
    |||| |||| |||||||||    
T  6563095 tatgggttccttaaacaat 6563077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 13490892 - 13490819
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||||| ||| ||||||||| ||| ||||| ||||| || ||||||||||||||||  ||||  ||||||||||    
T  13490892 tgtttgccttatattttcaagacaaaatttatttttgtgggttctttaaacaatgcttttagggcacttgttag 13490819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 149
Target Start/End: Complemental strand, 37331902 - 37331765
Alignment:
Q  12 attgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttt 111  Q
    ||||||||||||  ||||||||  |||||||| ||||  |||| |    |||||| ||||| | || |||||||| |||||| || | | ||||||||||    
T  37331902 attgtttaagcatctaaaagtagtaatttttgtattgacaattgtgtaattatgattttaatatatatttgacttatatttttaagataaaatttctttt 37331803  T
Q  112 tatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    |    ||||||||||||||||| || ||||||||||||    
T  37331802 tgcaggttctttaaacaatgcctttggaacacttgtta 37331765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 44153213 - 44153249
Alignment:
Q  76 atgtttgacttgtattttcaaaacataatttcttttt 112  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  44153213 atgtttggcttgtattttcaaaacaaaatttcttttt 44153249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 10625069 - 10624925
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||||||||||| |||| |||||||||  || |||||||||| ||||| |  |||||||||| ||| || |||||||||||||||||||| |||||||    
T  10625069 taagggcattgtttcagcatataaaagtagaaacttttgcattgaaaattgtacggttatgactataataagtgtttgacttgtattttcaagacataat 10624970  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    |||||||| || |||||||||||||||||||||||||||||||||    
T  10624969 ttctttttgtgggttctttaaacaatgcccttagaacacttgtta 10624925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 28514760 - 28514617
Alignment:
Q  6 aagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatt 105  Q
    ||||||||||||||||||  |||||||| ||| |||||||||||||||| |  |||||| |||| || || |||||||||| |||||||||  |||||||    
T  28514760 aagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataacttgaacaagtgtttgacttatattttcaaggcataatt 28514661  T
Q  106 tctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    |||||||||| |||| |||||||||||||||||  |||||||||    
T  28514660 tctttttatgggttccttaaacaatgcccttagggcacttgtta 28514617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 48488412 - 48488553
Alignment:
Q  4 ttaagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataa 103  Q
    ||||||| ||||||||||||  |||||||| ||| |||||||||||||||| |  |||||| |||| || || |||||||||| |||||||||| |||||    
T  48488412 ttaagggtattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataacttcaacaagtgtttgacttatattttcaaagcataa 48488511  T
Q  104 tttctttttatgagttctttaaacaatgcccttagaacactt 145  Q
    |||||||||||| |||| ||||||||||| |||||| |||||    
T  48488512 tttctttttatgggttccttaaacaatgcacttagagcactt 48488553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 31191495 - 31191352
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||||||||||||||||  |||||||| ||| |||| |||||||||||    |||||| ||||||| || |||||||||| |||||||||  ||||||    
T  31191495 taagggcattgtttaagcatctaaaagtagcaacttttacattggaaattgcacggttataactttaacaagtgtttgacttatattttcaaggcataat 31191396  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||||| |||| |||||||||||||||||  |||||||||    
T  31191395 ttctttttatg-gttccttaaacaatgcccttagggcacttgtta 31191352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 37869719 - 37869845
Alignment:
Q  11 cattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttcttt 110  Q
    ||||||||||| | ||||||||| ||| |||||||||| ||||| |  |||||||||||||| || |||||||||| |||||| ||||||||||||||||    
T  37869719 cattgtttaagtatataaaagtagcaacttttgcattgaaaattgtacggttatgactttaacaagtgtttgacttatatttttaaaacataatttcttt 37869818  T
Q  111 ttatgagttctttaaacaatgcccttag 138  Q
    || |||||||  |||||||||| |||||    
T  37869819 ttgtgagttc-ctaaacaatgcacttag 37869845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 12 - 130
Target Start/End: Original strand, 28646616 - 28646734
Alignment:
Q  12 attgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttt 111  Q
    |||||||||||| ||||||||| ||| |||| ||||||||||| |  |||||||||||||| |||| |||||||| |||||| || ||||||||||||||    
T  28646616 attgtttaagcatataaaagtagcaacttttacattggaaattgtacggttatgactttaacaaatttttgacttatatttttaagacataatttctttt 28646715  T
Q  112 tatgagttctttaaacaat 130  Q
    | |   |||||||||||||    
T  28646716 tgtagattctttaaacaat 28646734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 25119942 - 25120081
Alignment:
Q  11 cattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttcttt 110  Q
    ||||||||||||| ||||||||| ||| |||||||||  ||||| |  |||||| ||||||| | || ||||| |||||||||||| ||| |||||||||    
T  25119942 cattgtttaagcatataaaagtagcaacttttgcattataaattgtatggttataactttaacatatatttgaattgtattttcaagacacaatttcttt 25120041  T
Q  111 ttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    || ||  ||| ||||||||| |||||||  ||||||||||    
T  25120042 ttgtggattccttaaacaatacccttagggcacttgttag 25120081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 40198952 - 40199097
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttt-tgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataa 103  Q
    |||||||||||||||||||  |||||||| ||||||| |||||||| |||| |  |||||| ||| ||| || ||| | |||| |||||||||  |||||    
T  40198952 taagggcattgtttaagcatctaaaagtagcaattttttgcattgggaattgtatggttataactctaacaagtgtctaacttatattttcaaggcataa 40199051  T
Q  104 tttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||||||  |||||||||||| | ||||||| || ||||||    
T  40199052 tttctttttatggattctttaaacaacgtccttagagcatttgtta 40199097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 46515527 - 46515459
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacactt 145  Q
    ||||||||||||||||| |||| |  ||||||||||||||||||||||||||||| |||||| ||||||    
T  46515527 tgtttgacttgtatttttaaaataatatttctttttatgagttctttaaacaatgtccttaggacactt 46515459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 131
Target Start/End: Original strand, 1111747 - 1111819
Alignment:
Q  59 ggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatg 131  Q
    |||||||||||||| || |||||||||| ||||||||||||||||||  ||||| || ||||||||| |||||    
T  1111747 ggttatgactttaacaagtgtttgacttatattttcaaaacataattattttttgtgggttctttaagcaatg 1111819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 45662228 - 45662371
Alignment:
Q  4 ttaagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataa 103  Q
    ||||||| ||||||||||||  ||||||||  |||||||  ||||||||||    ||||||||||||  || |||| |||||| ||||||| ||||||||    
T  45662228 ttaagggtattgtttaagcatctaaaagtaataatttttatattggaaattgcacggttatgacttt--aacatgtatgacttatattttc-aaacataa 45662324  T
Q  104 tttctttttatgag-ttctttaaacaatgcccttagaacacttgtta 149  Q
    |||||||||||| | ||| ||||||||| | ||||  ||||||||||    
T  45662325 tttctttttatgggattccttaaacaatactcttaagacacttgtta 45662371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 19086397 - 19086284
Alignment:
Q  36 aatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgccct 135  Q
    ||||||||| ||||||||| |  ||| || |||| || || |||||||||| |||||||||  |||||||||||||||||  || |||||||||| ||||    
T  19086397 aatttttgctttggaaattgtacggtaataacttcaacaagtgtttgacttatattttcaaggcataatttctttttatggattttttaaacaataccct 19086298  T
Q  136 tagaacacttgtta 149  Q
     ||| || ||||||    
T  19086297 gagagcatttgtta 19086284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 23247756 - 23247864
Alignment:
Q  39 ttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttag 138  Q
    ||||||||||||||||    |||||| |||| || || |||||||||| |||||||||  |||||||||||||||||  ||  | |||||||||||||||    
T  23247756 ttttgcattggaaattgaacggttataacttcaacaagtgtttgacttatattttcaaggcataatttctttttatggattactaaaacaatgcccttag 23247855  T
Q  139 aacacttgtt 148  Q
     |||||||||    
T  23247856 -acacttgtt 23247864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 29555807 - 29555855
Alignment:
Q  102 aatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||||||||||  |||||| ||||||||||| ||||| |||||||||||    
T  29555807 aatttctttttgcgagttccttaaacaatgctcttaggacacttgttag 29555855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 138
Target Start/End: Complemental strand, 39158713 - 39158653
Alignment:
Q  78 gtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttag 138  Q
    ||||||||||||||||| | ||| | |||| |||||| ||||| |||| ||||||||||||    
T  39158713 gtttgacttgtattttcgagacaaattttccttttataagttccttaaccaatgcccttag 39158653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 43079458 - 43079390
Alignment:
Q  61 ttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaa 129  Q
    |||| ||||| | |||||||  |||||||||||||||||| | ||||||||||| | || |||||||||    
T  43079458 ttataacttttacaaatgttgaacttgtattttcaaaacaaagtttctttttataaattttttaaacaa 43079390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 6100658 - 6100802
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    ||||| ||||||||||||| ||||||||| ||| |||||||||| |||||||  |||||||||||||| || |||||||| ||||||||||| |||||||    
T  6100658 taaggacattgtttaagcatataaaagtagcaacttttgcattgaaaattatagggttatgactttaagaagtgtttgacatgtattttcaagacataat 6100757  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||| |||| || |||| |||||||||||||||||  |||||||||    
T  6100758 ttccttttgtgggttccttaaacaatgcccttagggcacttgtta 6100802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 32147863 - 32148007
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    ||||||||||||||||||| |||||||||  ||||||||||||| ||||| |  |||||||||||||| |||| ||||| ||||||||||||||||||||    
T  32147863 taagggcattgtttaagcatataaaagtagtaatttttgcattgcaaattgtacggttatgactttaataaatatttgatttgtattttcaaaacataat 32147962  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    |||||||| ||  |||||||||||| ||| | || ||||||||||    
T  32147963 ttctttttgtggattctttaaacaaagccatcaggacacttgtta 32148007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 7984686 - 7984547
Alignment:
Q  11 cattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttcttt 110  Q
    |||||||||||||   ||||||| ||| |||| ||||| ||||| |   ||||||||||| | |  |||||||||||||||||||| ||| | |||||||    
T  7984686 cattgtttaagcatccaaaagtagcaaattttacattgaaaattttgtagttatgacttttacatgtgtttgacttgtattttcaagacaaagtttcttt 7984587  T
Q  111 ttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    || || |||| |||||||||| ||| ||||||||||||||    
T  7984586 ttgtgggttcattaaacaatgtcctcagaacacttgttag 7984547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 40115 - 40025
Alignment:
Q  60 gttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||||||||||| | |  ||||||| |||||||||||| ||| ||||||||| | || |||| |||||||||| ||||||  ||||||||||    
T  40115 gttatgacttttacatgtgtttgatttgtattttcaagacaaaatttctttatgtgggttccttaaacaatgtccttagggcacttgttag 40025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 33134189 - 33134327
Alignment:
Q  12 attgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgac-ttgtattttcaaaacataatttcttt 110  Q
    ||||||||| ||  ||||||||  |||||||||||| |||||| |   ||||| |||| || ||||||||||| || ||||||  |  |||||||| |||    
T  33134189 attgtttaaacatctaaaagtataaatttttgcattagaaattgtacagttataacttcaacaaatgtttgaccttatatttttgaggcataattttttt 33134288  T
Q  111 ttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||| |||| |||||||||||| |||  ||||||||||    
T  33134289 ttatgggttccttaaacaatgcctttaagacacttgtta 33134327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 31631890 - 31631958
Alignment:
Q  76 atgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacact 144  Q
    ||||||||||| ||||||||| ||| | ||||||||| | ||||| ||||||||||| ||||| |||||    
T  31631890 atgtttgacttatattttcaagacaaactttctttttgtaagttccttaaacaatgctcttaggacact 31631958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 24120562 - 24120497
Alignment:
Q  79 tttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacactt 145  Q
    ||||| |||||||||||||||| ||||||||||||||   || |||||||||  |||||||||||||    
T  24120562 tttgatttgtattttcaaaacaaaatttctttttatg-catccttaaacaatatccttagaacactt 24120497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 13018611 - 13018467
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    ||||||||||||||||||| ||||||||| ||| |||||||||||||||| |  |  ||||||||||| ||||||||||||| ||||||||| | ||| |    
T  13018611 taagggcattgtttaagcatataaaagtagcaacttttgcattggaaattgtacgaatatgactttaacaaatgtttgacttatattttcaagatatatt 13018512  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||  ||||||| |||| ||||||||||||||||| ||||||||||    
T  13018511 tttcttttatgggttccttaaacaatgcccttaggacacttgtta 13018467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 12978368 - 12978228
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    ||||||||||||||||| | ||||||||| |||||||||| ||||||||| |  |||  ||||||||| || ||||||| |||||||||||| |||||||    
T  12978368 taagggcattgtttaagaatataaaagtagcaatttttgccttggaaattgtacggtcgtgactttaacaagtgtttgatttgtattttcaagacataat 12978269  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacactt 145  Q
    |||||||||||||||  ||||| || || ||||| ||||||    
T  12978268 ttctttttatgagtttcttaaataacgctcttaggacactt 12978228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 38573414 - 38573270
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||| |||||||||| |  ||||||||  || |||||||||||||||| |  |||||| |||| || ||||||||||||| |||||||||  ||||||    
T  38573414 taagggtattgtttaagtatctaaaagtagtaacttttgcattggaaattgtacggttataacttcaacaaatgtttgacttatattttcaaggcataat 38573315  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||||| |||| ||||||||||  |||||| |||||||||    
T  38573314 ttctttttatgggttccttaaacaatgttcttagagcacttgtta 38573270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 59 - 149
Target Start/End: Original strand, 24999437 - 24999527
Alignment:
Q  59 ggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    |||||||||||||| || |||||||||||||||||||| ||||||||||||||| || |||| || ||||||||||||||  |||||||||    
T  24999437 ggttatgactttaacaagtgtttgacttgtattttcaagacataatttctttttgtgggttcctttaacaatgcccttagggcacttgtta 24999527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 145
Target Start/End: Original strand, 36642698 - 36642834
Alignment:
Q  9 ggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttct 108  Q
    |||||||||||||||  |||||||| ||| |||| |||||||| || |  | |||||||||||  ||||||||||||||||||||||| ||||||||||     
T  36642698 ggcattgtttaagcatctaaaagtaacaacttttacattggaatttgtacgattatgactttatcaaatgtttgacttgtattttcaagacataatttcc 36642797  T
Q  109 ttttatgagttctttaaacaatgcccttagaacactt 145  Q
    |||| |   | | ||||||||||| ||||||||||||    
T  36642798 ttttgtagataccttaaacaatgctcttagaacactt 36642834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 150
Target Start/End: Original strand, 13177751 - 13177894
Alignment:
Q  7 agggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataattt 106  Q
    |||||||||||||||||   |||||||  || ||||  ||||||||||||   ||||||||||| | |  |||||||||||||||||||| ||| | |||    
T  13177751 agggcattgtttaagcattcaaaagtagtaacttttatattggaaattatgtagttatgacttttacatgtgtttgacttgtattttcaagacaaacttt 13177850  T
Q  107 cttttt-atgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||||| | || ||| ||||||||||||||||| |||||||||||    
T  13177851 ctttttgaaga-ttccttaaacaatgcccttaggacacttgttag 13177894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 23518322 - 23518178
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    ||||||| |||||||||||  ||||| ||  || |||||||||| ||||| |  ||||  |||||||| |||| ||||| || |||||| || | |||||    
T  23518322 taagggcgttgtttaagcatctaaaaatagtaacttttgcattgaaaattgtacggttcagactttaataaatatttgatttatatttttaagatataat 23518223  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    |||||||| || |||| |||||||||||| ||||| |||||||||    
T  23518222 ttctttttgtgggttccttaaacaatgcctttagagcacttgtta 23518178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 7642716 - 7642613
Alignment:
Q  11 cattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttcttt 110  Q
    |||||||||| ||  ||||| || ||| |||||||||| ||||| |  |||||| |||| || || |||||||||| |||||||||||||||||||||||    
T  7642716 cattgtttaaacatctaaaattagcaacttttgcattgtaaattgtacggttataacttcaacaagtgtttgacttatattttcaaaacataatttcttt 7642617  T
Q  111 ttat 114  Q
    ||||    
T  7642616 ttat 7642613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 149
Target Start/End: Original strand, 12763258 - 12763398
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||||||||||||||||  ||||| || |||||||||||||     || |   ||||| |||| || |||| |||||||| |||||||||| |||| |    
T  12763258 taagggcattgtttaagcatttaaaattagcaatttttgcattt----ttgtactgttataacttcaacaaatatttgacttatattttcaaagcatact 12763353  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||||| |||| |||||||||||| |||| ||| ||||||    
T  12763354 ttctttttatgggttccttaaacaatgcctttaggacatttgtta 12763398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 1090076 - 1090003
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||||||||||||||||||| ||| |||| |||||| || |||| |||||||||||||||| ||||||| ||||    
T  1090076 tgtttgacttgtattttcaagacaaaattcctttttgtgggttccttaaacaatgcccttaaaacactttttag 1090003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 44395689 - 44395640
Alignment:
Q  100 ataatttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    |||||||||||||||| |||| ||||||||||||||||  ||||||||||    
T  44395689 ataatttctttttatgggttccttaaacaatgcccttatgacacttgtta 44395640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 45079352 - 45079425
Alignment:
Q  79 tttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttagta 152  Q
    |||||| ||||||||||| ||||||| ||||||| || |||| |||||||||| |||| |  ||||||||||||    
T  45079352 tttgacatgtattttcaagacataatgtctttttgtgggttccttaaacaatgaccttggcgcacttgttagta 45079425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 33015581 - 33015625
Alignment:
Q  4 ttaagggcattgtttaagcagataaaagtaccaatttttgcattg 48  Q
    ||||||||||||||||||||  |||||||| ||| ||||||||||    
T  33015581 ttaagggcattgtttaagcatctaaaagtagcaacttttgcattg 33015625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 41735549 - 41735424
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||||||||||||||||  |||||||| ||||||||| |||||||||| |  | |||||||||||| || |||||||||||||||||||| |||||||    
T  41735549 taagggcattgtttaagcatctaaaagtagcaatttttgtattggaaattgtacgattatgactttaacaagtgtttgacttgtattttcaagacataat 41735450  T
Q  105 ttctttttatgagttctttaaacaat 130  Q
    |||||||| ||||||  |||||||||    
T  41735449 ttctttttgtgagtttcttaaacaat 41735424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 41622035 - 41621891
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    ||||||||||||||||||| ||||||||| ||| |||| ||||| ||||| |  | |||||||||||| || || |||| |||||||||||| |||||||    
T  41622035 taagggcattgtttaagcatataaaagtagcaacttttacattgaaaattgtacgattatgactttaacaagtgattgatttgtattttcaagacataat 41621936  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    |||||||| || |||| |||||||||||||||||  |||||||||    
T  41621935 ttctttttgtgggttccttaaacaatgcccttagggcacttgtta 41621891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 43142175 - 43142033
Alignment:
Q  4 ttaagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataa 103  Q
    ||||||| ||| |||||||| |||||||||  ||||||||||||||||||| | ||||||||||||||| ||   |||||||| ||||||||| ||||||    
T  43142175 ttaagggtattatttaagcatataaaagtaataatttttgcattggaaattgtaaggttatgactttaacaa---tttgacttatattttcaagacataa 43142079  T
Q  104 tttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||| || |||| |||||||||   ||||||||||||||||    
T  43142078 tttctttttgtgggttccttaaacaatagtcttagaacacttgtta 43142033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 26876073 - 26876206
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||| |||||||||||| ||||||||| ||  ||||| |||||||||| |  |||||||||||||| || ||||||||||||||||||||  ||||||    
T  26876073 taagggtattgtttaagcatataaaagtagcagcttttgtattggaaattgtagggttatgactttaagaagtgtttgacttgtattttcaagccataat 26876172  T
Q  105 ttctttttatgagttctttaaacaatgcccttag 138  Q
    |||||||| || |||| ||||||||| |||||||    
T  26876173 ttctttttttgggttccttaaacaattcccttag 26876206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 3121180 - 3121037
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||||||||||||||||  |||||||| | | ||| |||||| ||||| |  |||||| |||| || ||||| ||||||| ||||||||| |||||||    
T  3121180 taagggcattgtttaagcatctaaaagtagcgacttt-gcattgaaaattgtacggttataacttcaacaaatgattgacttatattttcaagacataat 3121082  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||||| |||| ||||||||||| ||||| ||||||||||    
T  3121081 ttctttttatgggttccttaaacaatgctcttaggacacttgtta 3121037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 52270587 - 52270443
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    ||||||||||||||||||| |||||| || ||| |||||||||||||||| |  |  ||||||| ||| || |||||||||| ||||||||| ||||| |    
T  52270587 taagggcattgtttaagcatataaaaatagcaacttttgcattggaaattgtacgagtatgactgtaacaagtgtttgacttatattttcaagacatatt 52270488  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||| |||| || |||| |||||||||||||||||  |||||||||    
T  52270487 ttccttttgtgggttccttaaacaatgcccttagggcacttgtta 52270443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 26 - 149
Target Start/End: Complemental strand, 2168555 - 2168432
Alignment:
Q  26 taaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaa 125  Q
    |||||||| ||| |||||||||| ||||| |  ||||| |||||||| || |||||||||||||||||||  ||||||||| |||||||| |||||||||    
T  2168555 taaaagtaacaacttttgcattgaaaattgtacggttacgactttaacaagtgtttgacttgtattttcaggacataatttatttttatgggttctttaa 2168456  T
Q  126 acaatgcccttagaacacttgtta 149  Q
    |||||| ||||||  |||||||||    
T  2168455 acaatgtccttagggcacttgtta 2168432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 4 - 139
Target Start/End: Original strand, 25231499 - 25231634
Alignment:
Q  4 ttaagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataa 103  Q
    |||||||||| ||| |||||  ||||| || ||| |||||||||||||||| |  |||||| |||| || |||| |||||||| ||||||||| ||||||    
T  25231499 ttaagggcatggttcaagcatctaaaactagcaacttttgcattggaaattgtacggttataacttcaacaaatatttgacttatattttcaagacataa 25231598  T
Q  104 tttctttttatgagttctttaaacaatgcccttaga 139  Q
    ||||||||||||  ||| ||||||||||||||||||    
T  25231599 tttctttttatggattccttaaacaatgcccttaga 25231634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 31861547 - 31861689
Alignment:
Q  6 aagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatt 105  Q
    ||||||||||||||||||  ||||| || ||| |||||||||||||||| |  |||||| | ||||| || |||||||||| ||||||||| ||||||||    
T  31861547 aagggcattgtttaagcatctaaaa-tagcaacttttgcattggaaattgtccggttataattttaacaagtgtttgacttatattttcaagacataatt 31861645  T
Q  106 tctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||||  ||| ||||||||| | ||||| ||||||||||    
T  31861646 tctttttatggattccttaaacaatactcttaggacacttgtta 31861689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 145
Target Start/End: Original strand, 8680518 - 8680637
Alignment:
Q  25 ataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttcttta 124  Q
    ||||||||||||| |||||||||||||||| |  | |||||||||||| |||||||| |||| ||||||||||||||| ||||  |||||| |||| |||    
T  8680518 ataaaagtaccaacttttgcattggaaattgtacgattatgactttaacaaatgttttacttatattttcaaaacatattttc-ctttatgggttcctta 8680616  T
Q  125 aacaatgcccttagaacactt 145  Q
    ||||| ||||||| |||||||    
T  8680617 aacaacgcccttaaaacactt 8680637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 9093571 - 9093719
Alignment:
Q  1 gctttaagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaaca 100  Q
    |||||||||| ||||||||||    ||||||||  ||||||||||||| ||||| |  |||||| |||| || || |||||||||| |||||||||  ||    
T  9093571 gctttaagggtattgtttaagtctctaaaagtagtaatttttgcattgaaaattgtacggttataacttaaacaagtgtttgacttatattttcaaggca 9093670  T
Q  101 taatttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
     |||||||||||||| |||| |||||||||| |||||| ||||||||||    
T  9093671 aaatttctttttatgggttccttaaacaatgtccttaggacacttgtta 9093719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 4 - 131
Target Start/End: Complemental strand, 37624951 - 37624824
Alignment:
Q  4 ttaagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataa 103  Q
    |||||| |||||||||||||  ||||||||  || |||||||||| ||||| |  |||||| ||||||| || |||||||||| |||||||||| ||| |    
T  37624951 ttaaggacattgtttaagcatctaaaagtagtaacttttgcattgaaaattgtacggttataactttaacaagtgtttgacttatattttcaaagcatta 37624852  T
Q  104 tttctttttatgagttctttaaacaatg 131  Q
    |||||||||||| |||| ||||||||||    
T  37624851 tttctttttatgggttccttaaacaatg 37624824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 16958357 - 16958499
Alignment:
Q  6 aagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatt 105  Q
    ||||||||||||||||||  |||||||| ||| |||| |||||||||||    | |||| |||| || || |||||||||| ||||||||| ||||||||    
T  16958357 aagggcattgtttaagcatctaaaagtagcaacttttacattggaaattgcacgtttataacttcaacaagtgtttgacttatattttcaagacataatt 16958456  T
Q  106 tctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||||  ||| ||||| |||||||| || ||||||||||    
T  16958457 tctttttatggattccttaaataatgccctcag-acacttgtta 16958499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 35808813 - 35808667
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    ||||| |||||||||||||  |||||||| ||| |||||||||| ||||| |  |||||| |||| ||  | |||||||||| ||||||||| | |||||    
T  35808813 taaggacattgtttaagcatctaaaagtagcaacttttgcattgaaaattgtacggttataacttcaactagtgtttgacttatattttcaagatataat 35808714  T
Q  105 ttctttttatgagttctttaaacaatg--cccttagaacacttgtta 149  Q
    ||||||||||| |||| ||||||||||  |||||||  |||||||||    
T  35808713 ttctttttatgggttccttaaacaatgtccccttagggcacttgtta 35808667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 42183486 - 42183376
Alignment:
Q  39 ttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttag 138  Q
    ||||||||| ||||||||  |||||||||||||| || | |||||||| |||||||||||||||||||| |||| ||| |||  |||| |||||||||||    
T  42183486 ttttgcattagaaattatacggttatgactttaacaagtatttgacttttattttcaaaacataatttccttttgtgaattccataaataatgcccttag 42183387  T
Q  139 aacacttgtta 149  Q
      |||||||||    
T  42183386 ggcacttgtta 42183376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 46737556 - 46737410
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaa-aaatgtttgacttgtattttcaaaacataa 103  Q
    |||| ||||| |||||||| |||||| || ||| |||||||||| ||||| |  | || ||||||| || |||||||| |||| ||||||||| |||| |    
T  46737556 taagagcattctttaagcatataaaaatatcaacttttgcattgaaaattgtacgattgtgacttttaacaaatgtttaacttatattttcaagacatga 46737457  T
Q  104 tttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||||||||| || |||| |||||||||| |||||  |||||||||||    
T  46737456 tttctttttgtgtgttccttaaacaatgtccttaagacacttgttag 46737410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 11 - 138
Target Start/End: Complemental strand, 43595095 - 43594969
Alignment:
Q  11 cattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttcttt 110  Q
    |||||||||||||  |||||||| ||| ||||| |||| ||||| |  |||||| |||| || ||  |||| ||||  |||||||| |||||||||||||    
T  43595095 cattgtttaagcatctaaaagtagcaacttttgtattgaaaattgtacggttataacttcaagaagggtttaacttacattttcaagacataatttcttt 43594996  T
Q  111 ttatgagttctttaaacaatgcccttag 138  Q
    ||||| ||| |||||||||||| |||||    
T  43594995 ttatgggtt-tttaaacaatgctcttag 43594969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 77 - 157
Target Start/End: Original strand, 29235595 - 29235675
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttagtatgacc 157  Q
    |||||||||| ||||||||| ||| ||||||||||| || |||| ||| | ||||| ||||| ||||||||||||| ||||    
T  29235595 tgtttgacttctattttcaagacaaaatttctttttgtgggttccttagataatgctcttaggacacttgttagtaagacc 29235675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 142
Target Start/End: Original strand, 55969860 - 55969999
Alignment:
Q  3 tttaagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacata 102  Q
    |||||||| |||||||||||| |||||| || ||| |||||||||  ||||| |  |||| ||||||||| |  |||||||  |||||||| || ||||     
T  55969860 tttaagggtattgtttaagcatataaaaatagcaacttttgcattaaaaattgtagggttgtgactttaacatgtgtttgatatgtatttttaagacatg 55969959  T
Q  103 atttctttttatgagttctttaaacaatgcccttagaaca 142  Q
    |||| ||||| ||  ||  |||||||||||||||| ||||    
T  55969960 atttttttttgtggatttcttaaacaatgcccttaaaaca 55969999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 8291112 - 8291022
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttagtatgaccttatttttaa 167  Q
    |||||||||||||||| ||| ||| | |||| || ||||  ||| |||||||||||||||||  |||||||||| |||||| |||| ||||    
T  8291112 tgtttgacttgtatttccaagacaaattttccttatatgtattccttaaacaatgcccttagggcacttgttagcatgaccctattattaa 8291022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 29927374 - 29927284
Alignment:
Q  60 gttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||||||||||| | |  |||||||||||||||| ||| ||| | ||||||||| ||  ||| |||||||||||||||||  ||||||||||    
T  29927374 gttatgacttttatatgtgtttgacttgtatttccaagacaaagtttctttttgtggattccttaaacaatgcccttagggcacttgttag 29927284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 35799034 - 35798964
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgt 147  Q
    |||||||| | ||||||||||| | |||||||| | |||  ||||||||||||||| ||||||||||||||    
T  35799034 tgtttgacatatattttcaaaataaaatttcttataatggattctttaaacaatgctcttagaacacttgt 35798964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 142
Target Start/End: Complemental strand, 49105996 - 49105921
Alignment:
Q  66 actttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaaca 142  Q
    |||||||||| ||||||| || ||||||||| |||  ||||||||||||| ||| |||| ||||||| |||||||||    
T  49105996 actttaaaaagtgtttgaattatattttcaagacaatatttctttttatg-gttttttatacaatgctcttagaaca 49105921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 34236776 - 34236717
Alignment:
Q  79 tttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttag 138  Q
    ||||| ||||||||| || ||| ||||||||||| || ||||||||||||||| ||||||    
T  34236776 tttgaattgtatttttaagacaaaatttctttttgtgggttctttaaacaatgtccttag 34236717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 4452915 - 4452825
Alignment:
Q  60 gttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||||||||||| | | || |||||||||||| ||||||||| |||||| ||||||   ||| ||| ||||| |  ||||||||||||||||    
T  4452915 gttatgacttttagatatatttgacttgtatattcaaaacaaaatttcattttatagattccttagacaatacttttagaacacttgttag 4452825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 6917360 - 6917302
Alignment:
Q  79 tttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgccctta 137  Q
    ||||| |||||||||||| |||  |||||||||||||  ||| ||||||||||||||||    
T  6917360 tttgatttgtattttcaagacagtatttctttttatggattccttaaacaatgccctta 6917302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 145
Target Start/End: Complemental strand, 15825236 - 15825168
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacactt 145  Q
    ||||| ||||||||||| || ||||||| | ||||| ||||||| ||||||||| | |||| |||||||    
T  15825236 tgtttaacttgtatttttaagacataatatatttttgtgagttcattaaacaatacacttaaaacactt 15825168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 45654823 - 45654775
Alignment:
Q  83 acttgtattttcaaaacataatttctttttatgagttctttaaacaatg 131  Q
    |||||||||||||||||| |||||||||| ||||  || ||||||||||    
T  45654823 acttgtattttcaaaacaaaatttcttttaatgaaatccttaaacaatg 45654775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 131
Target Start/End: Complemental strand, 56040401 - 56040332
Alignment:
Q  60 gttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatg 131  Q
    ||||||||||||| ||||||||||||| |||||| || | ||||||  || ||||| |||| ||||||||||    
T  56040401 gttatgactttaacaaatgtttgacttatatttttaagatataatt--ttcttatgggttccttaaacaatg 56040332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 42410194 - 42410334
Alignment:
Q  9 ggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttct 108  Q
    |||||||||||| ||  |||||||| ||| ||||||||||||||||||  |||  |||| |||| || |||||||||||||||||||| |||||||||||    
T  42410194 ggcattgtttaatcatctaaaagtagcaacttttgcattggaaattatatggtattgaccttaacaagtgtttgacttgtattttcaagacataatttct 42410293  T
Q  109 ttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    |||| || |||| |||||||||||||||||  |||||||||    
T  42410294 ttttgtgggttccttaaacaatgcccttagggcacttgtta 42410334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 150
Target Start/End: Complemental strand, 51049943 - 51049798
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    ||||||||||||||||||| ||||||||| ||| |||||||  ||| |||||  | |||||||||||| || ||||| |||||||||||||| |||||||    
T  51049943 taagggcattgtttaagcatataaaagtagcaacttttgcaccggagattatacgattatgactttaacaagtgtttaacttgtattttcaagacataat 51049844  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||  |||| | | ||| ||||||||| |||||||||||||||||||    
T  51049843 tttcttttctaaattccttaaacaatacccttagaacacttgttag 51049798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 3831376 - 3831522
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    ||||| |||||||||||||  ||||||||  ||||||||||||||||||| |   ||||||||||||| |  ||||  | |||||||||||| |||||||    
T  3831376 taaggccattgtttaagcatctaaaagtagaaatttttgcattggaaattgtacagttatgactttaacatgtgttgaatttgtattttcaagacataat 3831475  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgttagta 152  Q
    || |||||||| |||||||||||||||||||||  |||||||||||||    
T  3831476 tt-tttttatgggttctttaaacaatgcccttaagacacttgttagta 3831522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 150
Target Start/End: Complemental strand, 894898 - 894757
Alignment:
Q  9 ggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttct 108  Q
    |||||||||||||||  |||||||| ||| |||||  ||| ||||| |  | |||||||||||| || ||||||||||||| |||||| ||||||||||     
T  894898 ggcattgtttaagcatctaaaagtagcaacttttgtgttgaaaattgtacgattatgactttaacaagtgtttgacttgtactttcaagacataatttcc 894799  T
Q  109 ttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||| || |||| |||||||||||||||||  ||||||||||    
T  894798 ttttgtgggttccttaaacaatgcccttagggcacttgttag 894757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 36563973 - 36563832
Alignment:
Q  6 aagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatt 105  Q
    ||||||||||||||||||  |||||||| ||| |||| ||||| ||||| |  || ||| ||||||| || |||||||||| |||||||||  |||||||    
T  36563973 aagggcattgtttaagcatttaaaagtagcaacttttacattgaaaattgtacggatataactttaacaagtgtttgacttatattttcaaggcataatt 36563874  T
Q  106 tctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||  ||||||| |||||||||| |||||| ||||||||||    
T  36563873 tctttt--tgagttccttaaacaatgtccttaggacacttgtta 36563832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 133
Target Start/End: Original strand, 5892666 - 5892788
Alignment:
Q  11 cattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttcttt 110  Q
    |||||||||||||  ||||| ||  || ||||| ||||||||||||  |||||||||||||| || ||||||||||||||||| || | |||||||||||    
T  5892666 cattgtttaagcatttaaaaatagtaacttttggattggaaattatacggttatgactttaataagtgtttgacttgtatttttaagatataatttcttt 5892765  T
Q  111 ttatgagttctttaaacaatgcc 133  Q
    || |   ||| ||||||||||||    
T  5892766 ttgtatattccttaaacaatgcc 5892788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 11818210 - 11818132
Alignment:
Q  79 tttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttagtatgacc 157  Q
    |||||||||||||||||| |||  ||||||||||||| ||||||||||||||||| |||||  ||||||||||| ||||    
T  11818210 tttgacttgtattttcaagacaagatttctttttatgggttctttaaacaatgcctttagagtacttgttagtaagacc 11818132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 34038797 - 34038921
Alignment:
Q  10 gcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctt 109  Q
    ||||||||||||||  ||||||||  || ||||||| |||||||| |  |||||| | ||||||   |||||||||| |||||||||  |||||||||||    
T  34038797 gcattgtttaagcatctaaaagtagtaacttttgcaatggaaattgtacggttataagtttaaa---tgtttgacttatattttcaatgcataatttctt 34038893  T
Q  110 tttatgagttctttaaacaatgccctta 137  Q
    ||||||| ||  ||||||||| ||||||    
T  34038894 tttatgaatttcttaaacaataccctta 34038921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 38067712 - 38067813
Alignment:
Q  11 cattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttcttt 110  Q
    |||||||||||||  ||||||||  || ||||| |||| ||||| |  | | |||||||||| |||||||||||||||||||||||  ||||||||||||    
T  38067712 cattgtttaagcatctaaaagtattaacttttgtattgaaaattgtacgatgatgactttaacaaatgtttgacttgtattttcaaggcataatttcttt 38067811  T
Q  111 tt 112  Q
    ||    
T  38067812 tt 38067813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 150
Target Start/End: Original strand, 3527734 - 3527824
Alignment:
Q  60 gttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||||||||||| | | ||||||||||||||||| || |||| ||||||||||| ||  ||| ||||||||||| ||||||  |||||||||    
T  3527734 gttatgacttttatatatgtttgacttgtatttccataacaaaatttctttttgtggattccttaaacaatgctcttagagtacttgttag 3527824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 13984245 - 13984346
Alignment:
Q  12 attgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttt 111  Q
    ||||||||| ||  |||||||| ||| |||| ||||||||||  |  |||||| |||| || ||||||||||||| |||||| ||| |||||||||||||    
T  13984245 attgtttaaacatctaaaagtagcaacttttacattggaaatcgtacggttataacttcaataaatgtttgacttatatttttaaagcataatttctttt 13984344  T
Q  112 ta 113  Q
    ||    
T  13984345 ta 13984346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 112
Target Start/End: Complemental strand, 10040524 - 10040419
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||||||||||||||||  ||||||||  || |||||||||||||||| |  |||||| |||| || |||||||  |||| ||||||||| || ||||    
T  10040524 taagggcattgtttaagcatctaaaagtagtaacttttgcattggaaattgtccggttataacttcaacaaatgtt--acttatattttcaagacgtaat 10040427  T
Q  105 ttcttttt 112  Q
    || |||||    
T  10040426 tttttttt 10040419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 110
Target Start/End: Original strand, 1795816 - 1795922
Alignment:
Q  4 ttaagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataa 103  Q
    ||||| |||||||||||| |  ||||| || ||| |||| | ||| ||||| |  |||||||||||||| |  |||||||||||||||||||| || |||    
T  1795816 ttaagagcattgtttaaggatttaaaaataacaacttttaccttgaaaattgtacggttatgactttaagatgtgtttgacttgtattttcaagacttaa 1795915  T
Q  104 tttcttt 110  Q
    |||||||    
T  1795916 tttcttt 1795922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 135
Target Start/End: Complemental strand, 32213563 - 32213506
Alignment:
Q  78 gtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgccct 135  Q
    ||||||||| |||||| || |||||||||||||||||| |||  ||||||||||||||    
T  32213563 gtttgacttatatttttaagacataatttctttttatgggtttcttaaacaatgccct 32213506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 38788776 - 38788655
Alignment:
Q  27 aaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaa 126  Q
    ||||||| ||| |||| ||| | ||||| ||  ||||||||||| | || ||||||||||| |||| ||| ||| |||||| ||||||| | ||||||||    
T  38788776 aaaagtagcaacttttacatggaaaattgtttagttatgactttcacaagtgtttgacttgaatttacaagacaaaatttccttttatgggctctttaaa 38788677  T
Q  127 caatgcccttagaacacttgtt 148  Q
    ||||| | ||| || |||||||    
T  38788676 caatgtctttaaaatacttgtt 38788655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 13208126 - 13208059
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaa 72  Q
    ||||| |||||||||||||  |||||||| ||| ||||| ||||||||||||  | ||||||||||||    
T  13208126 taaggacattgtttaagcatctaaaagtaacaacttttgaattggaaattatatgattatgactttaa 13208059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 32815235 - 32815290
Alignment:
Q  76 atgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatg 131  Q
    |||||||||||||||||| || | | ||| ||||||| ||||||||||||||||||    
T  32815235 atgtttgacttgtatttttaagataaaatatctttttgtgagttctttaaacaatg 32815290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 150
Target Start/End: Original strand, 41834827 - 41834901
Alignment:
Q  76 atgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||||||||||||||||| || | | |||| ||| | |||| ||| |||||||||| |||||||| |||||||||    
T  41834827 atgtttgacttgtatttttaagatacaattacttataatgaattccttaaacaatgtccttagaatacttgttag 41834901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 17922357 - 17922430
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||||||||| |||||  || ||| |||||| ||||| |  ||||||||||||||||||||| |||||| ||||    
T  17922357 tgtttgacttatatttctaagacacaatttccttttaagtattctttaaacaatgcccttaggacacttcttag 17922430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 34339028 - 34338884
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||| ||||||||||||  ||||| || ||| |||||||||||||| | |  |||||| |||| || || |||||||||| |||||||||  ||||||    
T  34339028 taagggtattgtttaagcatctaaaaatagcaacttttgcattggaaagtgtgtggttataacttcaacaagtgtttgacttatattttcaaggcataat 34338929  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||||| ||||||||||||||| ||||||  |||||||||    
T  34338928 ttctttttatgggttctttaaacaatgtccttagggcacttgtta 34338884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 15477010 - 15476866
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||| |||||||||||||| ||||||||| ||||||||  |||| ||||| |  |  ||||||||||| || |||||||||| ||||||||| ||||| |    
T  15477010 taagagcattgtttaagcatataaaagtagcaatttttttattgaaaattgtacgagtatgactttaacaagtgtttgacttatattttcaagacatatt 15476911  T
Q  105 ttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    | | ||||||| |||| |||||||||| |||||| | ||||||||    
T  15476910 tcccttttatgcgttccttaaacaatgtccttaggatacttgtta 15476866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 32292268 - 32292357
Alignment:
Q  61 ttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||| ||||||| ||||||||||||| |||||||||||| |||||| |||||||  |||| ||||||||| ||||||| |||||||||||    
T  32292268 ttataactttaacaaatgtttgacttatattttcaaaacgtaatttatttttataggttccttaaacaatacccttaggacacttgttag 32292357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 60 - 150
Target Start/End: Complemental strand, 36487281 - 36487191
Alignment:
Q  60 gttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||||||||||||| | |||||||| |||||||||||| ||||||||||||||| || |||| ||||||||||  |||| | ||||||||||    
T  36487281 gttatgactttaacatatgtttgatttgtattttcaatacataatttctttttgtgggttccttaaacaatgttcttatagcacttgttag 36487191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 606676 - 606802
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||||||||||||||||  ||||| || |||||||| ||||||||||| |    |||| ||||||| |||| ||||| || ||||||  | | |||||    
T  606676 taagggcattgtttaagcatctaaaaatagcaatttttacattggaaattgtacctttattactttaataaatatttgatttatatttttgagatataat 606775  T
Q  105 ttctttttatgagttctttaaacaatg 131  Q
    |||||||||||| ||| ||||||||||    
T  606776 ttctttttatgaattccttaaacaatg 606802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 149
Target Start/End: Original strand, 10285332 - 10285393
Alignment:
Q  87 gtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgtta 149  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||  |||||||||    
T  10285332 gtattttcaaaacataatttctttttatg-gttccttaaacaatgcccttagggcacttgtta 10285393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 16054437 - 16054510
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||||||||||||||||| |||||| ||||||||||| || |||  |||||||||| |||||| |||||||||||    
T  16054437 tgtttgacttgtattttaaaaacaaaatttctttttgtgggtttcttaaacaatgtccttaggacacttgttag 16054510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 25713469 - 25713330
Alignment:
Q  10 gcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctt 109  Q
    ||||||||||||||  ||||| || ||| ||||||||||||| || |  | |||||||||||| |  | ||||  || ||||||||| | ||||||||||    
T  25713469 gcattgtttaagcatctaaaa-taacaacttttgcattggaacttgtacgattatgactttaacatgtatttgctttatattttcaagagataatttctt 25713371  T
Q  110 tttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||| ||||||| ||||||||||| |||| | ||||||||||    
T  25713370 tttgtgagttccttaaacaatgcacttaaagcacttgttag 25713330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 111
Target Start/End: Complemental strand, 8713901 - 8713796
Alignment:
Q  5 taagggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataat 104  Q
    |||||| ||||||||||||  |||||||| ||| ||||| ||| |||||| |   |||||||||| |||| ||||||||||||||||||||| ||| |||    
T  8713901 taagggtattgtttaagcatttaaaagtaacaacttttgtattagaaattgtgcagttatgactt-aaaatatgtttgacttgtattttcaagacaaaat 8713803  T
Q  105 ttctttt 111  Q
    || ||||    
T  8713802 ttttttt 8713796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 150
Target Start/End: Original strand, 1088209 - 1088350
Alignment:
Q  9 ggcattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttct 108  Q
    |||||||||||||||  |||||||| ||| | ||  ||| |||||| |  | |||||| ||||| | |||||| |||| |||||| || | |||||||||    
T  1088209 ggcattgtttaagcatctaaaagtagcaactcttatattagaaattgtacgattatgattttaatatatgtttaacttatatttttaagatataatttct 1088308  T
Q  109 ttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||| || |||| ||||||||||| |||||| || |||||||    
T  1088309 ttttgtgggttccttaaacaatgcacttagagcatttgttag 1088350  T

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Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 14663049 - 14662965
Alignment:
Q  59 ggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacac 143  Q
    |||||| |||| || || |||||||||| |||||| ||  |||||||| ||||||||||||| ||||||||||| |||| |||||    
T  14663049 ggttataacttcaacaagtgtttgacttatatttttaatgcataatttttttttatgagttccttaaacaatgcacttaaaacac 14662965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 31006385 - 31006329
Alignment:
Q  76 atgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgc 132  Q
    ||||||||||| ||||||||| |||| ||||||||||||| |||||||||| |||||    
T  31006385 atgtttgacttatattttcaagacatgatttctttttatgggttctttaaataatgc 31006329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 29045332 - 29045447
Alignment:
Q  11 cattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttcttt 110  Q
    |||||||||| ||  ||||||||  ||||||||||||  |||||||   ||||||||||||| || ||||||| || |||||| || | |||||||||||    
T  29045332 cattgtttaaccatctaaaagtagtaatttttgcattaaaaattatatagttatgactttaacaagtgtttgatttatatttttaatatataatttcttt 29045431  T
Q  111 ttatgagttctttaaa 126  Q
    || || |||| |||||    
T  29045432 ttgtgggttccttaaa 29045447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 3135649 - 3135746
Alignment:
Q  60 gttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttagtatgacc 157  Q
    ||||||||||| | | |||||||||||||||||| |  ||| | |||||||||||  |||  ||||||||| ||||||| |||||| ||||| |||||    
T  3135649 gttatgacttttatatatgtttgacttgtatttttatgacaaactttctttttattggtttcttaaacaatacccttaggacacttattagtctgacc 3135746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 61 - 157
Target Start/End: Complemental strand, 40220430 - 40220334
Alignment:
Q  61 ttatgactttaaaaaatgtttgacttgtattttcaaaacataattt-ctttttatgagttctttaaacaatgcccttagaacacttgttagtatgacc 157  Q
    |||||||||| | || | |||||||||||||||||| ||| ||||| ||||||| | |||| ||||||||||||||||| |  |||||||| ||||||    
T  40220430 ttatgactttgacaagtatttgacttgtattttcaagacaaaatttcctttttaag-gttccttaaacaatgcccttaggatgcttgttagcatgacc 40220334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 39351091 - 39351151
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgccctta 137  Q
    |||||||||||||||||||  | | ||||| ||||| ||||||||||||||||||| ||||    
T  39351091 tgtttgacttgtattttcatgataaaatttatttttctgagttctttaaacaatgctctta 39351151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 1056556 - 1056619
Alignment:
Q  87 gtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    ||||||||||  || ||||||||||||||||||  ||||||||||| ||||  |||||||||||    
T  1056556 gtattttcaaggcaaaatttctttttatgagtttcttaaacaatgctcttaagacacttgttag 1056619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 131
Target Start/End: Complemental strand, 7248472 - 7248418
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatg 131  Q
    ||||||| |||||||||||| ||| ||| ||||||||||||| | ||||||||||    
T  7248472 tgtttgatttgtattttcaagacaaaatatctttttatgagtaccttaaacaatg 7248418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 565567 - 565627
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgccctta 137  Q
    |||||||||||||||||||| ||| || |||||||| |  ||| |||||| ||||||||||    
T  565567 tgtttgacttgtattttcaagacaaaaattctttttgtaggttttttaaataatgccctta 565627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 13138528 - 13138639
Alignment:
Q  36 aatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgccct 135  Q
    ||||||| |||||||||||||    |||||||||| | |  |||||||||||||||||||| | | | ||| | |||||| |||| ||||| ||||  ||    
T  13138528 aatttttacattggaaattatgtaattatgacttttatatgtgtttgacttgtattttcaagataaattttttatttatgggttccttaaa-aatgatct 13138626  T
Q  136 tagaacacttgtt 148  Q
    |||||||||||||    
T  13138627 tagaacacttgtt 13138639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 12 - 137
Target Start/End: Original strand, 433877 - 434000
Alignment:
Q  12 attgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacataatttctttt 111  Q
    |||||||||||| ||||||||| ||| ||| | |||| ||||| | |  |||||||||||| || |||||||||| ||||||||| ||||||||| ||||    
T  433877 attgtttaagcatataaaagtagcaactttcgtattgtaaattgtaa--ttatgactttaacaagtgtttgacttatattttcaagacataatttttttt 433974  T
Q  112 tatgagttctttaaacaatgccctta 137  Q
    | || |||  ||||||||||||||||    
T  433975 tgtgggtttcttaaacaatgccctta 434000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 171589 - 171680
Alignment:
Q  11 cattgtttaagcagataaaagtaccaatttttgcattggaaattattaggttatgactttaaaaaatgtttgacttgtattttcaaaacata 102  Q
    |||||||||||||  |||||||| ||| |||||||||  ||||| ||  ||| ||||||||| |  |||||||||||||||||||| |||||    
T  171589 cattgtttaagcatctaaaagtagcaacttttgcattaaaaattgttcagttgtgactttaacatgtgtttgacttgtattttcaagacata 171680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 97848 - 97921
Alignment:
Q  77 tgtttgacttgtattttcaaaacataatttctttttatgagttctttaaacaatgcccttagaacacttgttag 150  Q
    |||||||||||||||| ||| ||| |||||  ||||||| |||  |||||||||||||||||  ||||||||||    
T  97848 tgtttgacttgtatttccaagacaaaatttgcttttatgggttgcttaaacaatgcccttagggcacttgttag 97921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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