View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_115 (Length: 251)
Name: NF1304_high_115
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_115 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 37244878 - 37245115
Alignment:
| Q |
1 |
cgacactgctcgggacgttccatttcttagtagaagtgggatcctaatcaacgctcttgggaacgataaacttgtggccaaattgttcaactcattggcc |
100 |
Q |
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| T |
37244878 |
cgacactgctcaggacgttccatttcttagtagaagtgggatcctaatcaacgctcttgggaacgataaacttgtggccaaattgttcaactcattggcc |
37244977 |
T |
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| Q |
101 |
aaagaaatctccatggatcgcaatggtgaacttgatatggtgatgacgaatatgaagtactattgtgaaaaaccttggaaaagttggcgggcaagtctca |
200 |
Q |
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| T |
37244978 |
aaagaaatctccatggatcgcaatggtgaacttgatatggtgatgacgaatatgaagtactattgtgaaaaaccttggaaaagttggcgtgcaagtctca |
37245077 |
T |
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| Q |
201 |
ttcaaacttattttaggaacccttgggctatggtgtct |
238 |
Q |
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| T |
37245078 |
ttcaaacttattttaggaacccttgggctatggtgtct |
37245115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 33 - 238
Target Start/End: Original strand, 37283372 - 37283577
Alignment:
| Q |
33 |
gaagtgggatcctaatcaacgctcttgggaacgataaacttgtggccaaattgttcaactcattggccaaagaaatctccatggatcgcaatggtgaact |
132 |
Q |
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| T |
37283372 |
gaagtgggatcataatcaactatcttgagagtgacaaagctgttgccaaattgttcaactccttggcaaaagaaatcccaatggatcgtgaaggagaact |
37283471 |
T |
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| Q |
133 |
tgatatggtgatgacgaatatgaagtactattgtgaaaaaccttggaaaagttggcgggcaagtctcattcaaacttattttaggaacccttgggctatg |
232 |
Q |
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| T |
37283472 |
tgaagaggtgacaaagagtatgatttcttactgtaagaagccgtggaaaagttggcgtgcaagtctcattcaaacttattttaggaacccttgggctatg |
37283571 |
T |
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| Q |
233 |
gtgtct |
238 |
Q |
| |
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|||||| |
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| T |
37283572 |
gtgtct |
37283577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 170 - 238
Target Start/End: Original strand, 37965712 - 37965780
Alignment:
| Q |
170 |
aaaccttggaaaagttggcgggcaagtctcattcaaacttattttaggaacccttgggctatggtgtct |
238 |
Q |
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| T |
37965712 |
aaaccttggaaaagatggcgtgctagtctcattcgtacttattttaggagcccttgggctatggtgtct |
37965780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 231
Target Start/End: Original strand, 37319119 - 37319317
Alignment:
| Q |
33 |
gaagtgggatcctaatcaacgctcttgggaacgataaacttgtggccaaattgttcaactcattggccaaagaaatctccatggatcgcaatggtgaact |
132 |
Q |
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| T |
37319119 |
gaagtgggatcataatcaatgctcttggaagcgataaagttgtttccaaattgtttaactcgttgtctaaagacataacagtggatcgtcatggagtact |
37319218 |
T |
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| Q |
133 |
tgatatggtgatgacgaatatgaagtactattgtgaaaaaccttggaaaagttggcgggcaagtctcattcaaacttattttaggaacccttgggctat |
231 |
Q |
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|||| |||||| || || ||||| | || || | ||||| |||||||| ||||| || | ||||||||||||||||||||| ||||| |||||||| |
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| T |
37319219 |
tgatgtggtgaggatgagtatgagtgattactgcaagaaaccgtggaaaagatggcgtgctaatctcattcaaacttattttagaaacccgtgggctat |
37319317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 16571957 - 16571916
Alignment:
| Q |
196 |
tctcattcaaacttattttaggaacccttgggctatggtgtc |
237 |
Q |
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||||| ||| ||||||||||||||||||||| |||||||||| |
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| T |
16571957 |
tctcactcacacttattttaggaacccttggtctatggtgtc |
16571916 |
T |
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