View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_116 (Length: 251)
Name: NF1304_high_116
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_116 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 251
Target Start/End: Original strand, 9913422 - 9913644
Alignment:
| Q |
29 |
aaaaatgtcctaaagccacaagtttgacgactattatcaaccactttcattattaattagggcccttccatttattttaactacactctaatcaacacga |
128 |
Q |
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| T |
9913422 |
aaaaatgtcctaaaggcacatgttagaccactattatcaaccactttcattattaattagggcccttccatttattttaactaaactctaatcaacacga |
9913521 |
T |
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| Q |
129 |
aggttatcaatatgctttttctatagtactatgtttaatttggatcacgtgaacataataaatatagccaactgctatgaaatcaaatgatgattttgat |
228 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
9913522 |
aggttatcaatatgctttttctatagtactatgcttaatttggatcacgtgaacataataaatattgccaactgctatgaaatcaaatgatgattttgat |
9913621 |
T |
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| Q |
229 |
gttaagaacgtccacaatgaagc |
251 |
Q |
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||||||||||||||||||||||| |
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| T |
9913622 |
gttaagaacgtccacaatgaagc |
9913644 |
T |
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