View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_119 (Length: 251)
Name: NF1304_high_119
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_119 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 2786326 - 2786104
Alignment:
| Q |
1 |
ttgtttatctactaaaagttccacattttcctttaaccattgaagctaataaggttgtggatgtggggttgttttcaaaccaagttttgtgactaatcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2786326 |
ttgtttatctactaaaagttccacattttcctttaaccattgaagctaataaggttgtggatgtggggttgttttcaaaccaagttttatgactaatcta |
2786227 |
T |
|
| Q |
101 |
gtgctagccacatttgtacaactatcactatcaattatcaaacaatagacttttccactaactaggcatctagtatgaaaaatgttttccctttgagaat |
200 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2786226 |
gtgctagtcacatttgtacaactaccactatcaattatcaaacatcagactttttcactaactaggcatctagtatgaaaaatattttccctttgagaat |
2786127 |
T |
|
| Q |
201 |
tatcattatctttaatctggact |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
2786126 |
tatcattatctttaatctggact |
2786104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 21798880 - 21798659
Alignment:
| Q |
2 |
tgtttatctactaaaagttccacattttcctttaaccattgaagctaataaggttgtggatgtggggttgttttcaaaccaagttttgtgactaatctag |
101 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| ||| || |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
21798880 |
tgtttatctactaaaagttccacaccttcctttagccattgaagcttatatggccgtggatgtggggttgtttccaaaccaagttttgtgactaatctag |
21798781 |
T |
|
| Q |
102 |
tgctagccacatttgtacaactatcactatcaattatcaaacaatagacttttccactaactaggcatctagtatgaaaaatgttttccctttgagaatt |
201 |
Q |
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||||||||||||||||||||||| |||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21798780 |
tgctagccacatttgtacaactaccactgtcaataatcaaagagcagacttttccactaactaggcatctagtatgaaaaatgttttccctttgagaatt |
21798681 |
T |
|
| Q |
202 |
atcattatctttaatctggact |
223 |
Q |
| |
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||||||||| |||||||||||| |
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| T |
21798680 |
atcattatccttaatctggact |
21798659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 27742893 - 27742672
Alignment:
| Q |
2 |
tgtttatctactaaaagttccacattttcctttaaccattgaagctaataaggttgtggatgtggggttgttttcaaaccaagttttgtgactaatctag |
101 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| ||||| ||| ||| | ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27742893 |
tgtttatctactaaaagttccacagtttcctttagccatcgaagcctatatggtcgcggatgtgcggttgttttcaaaccaagttttgtgactaatctag |
27742794 |
T |
|
| Q |
102 |
tgctagccacatttgtacaactatcactatcaattatcaaacaatagacttttccactaactaggcatctagtatgaaaaatgttttccctttgagaatt |
201 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27742793 |
tgctagccacatttgtacaactaccactatcaattatcaaagagcaagtttttccattaactaggcatctagtatgaaaaatgttttccctttgagaatt |
27742694 |
T |
|
| Q |
202 |
atcattatctttaatctggact |
223 |
Q |
| |
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||||||||| ||||| |||||| |
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| T |
27742693 |
atcattatccttaatatggact |
27742672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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