View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_124 (Length: 249)
Name: NF1304_high_124
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_124 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 3541822 - 3542059
Alignment:
| Q |
1 |
cctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3541822 |
cctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgtt |
3541921 |
T |
|
| Q |
101 |
atgcttttcaaatggcagttcacctaattaattgtatgcccactcctcaatgtcacaacaaatgtcctcatgaaatcctttttggttccaaacccaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3541922 |
atgcttttcaaatggcagttcacctaattaattgtatgcccactcctcaatgtcacaacaaatgtcctcatgaaatcctttttggttccaaacccaatta |
3542021 |
T |
|
| Q |
201 |
tctcaattttcgtgtttttgggagtctttgttatcctt |
238 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
3542022 |
tctcaatcttcgtgtttttgggagtctttgttatcctt |
3542059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 5400847 - 5401082
Alignment:
| Q |
1 |
cctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400847 |
cctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgtt |
5400946 |
T |
|
| Q |
101 |
atgcttttcaaatggcagttcacctaattaattgtatgcccactcctcaatgtcacaacaaatgtcctcatgaaatcctttttggttccaaacccaatta |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400947 |
atgcttttcaaatggcagttcacctaattaat--catgcccactcctcaatgtcacaacaaatgtcctcatgaaatcctttttggttccaaacccaatta |
5401044 |
T |
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| Q |
201 |
tctcaattttcgtgtttttgggagtctttgttatcctt |
238 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |
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| T |
5401045 |
tctcaatcttcgtgtttttgggagtctttgttatcctt |
5401082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 26592327 - 26592095
Alignment:
| Q |
1 |
cctgaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgtt |
100 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||| |||||||||| |||||||| || ||||| | ||||| |||| | || |||| ||| ||||||| |
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| T |
26592327 |
cctgaacatattggcattgcagaacgcaaacattgccatatagtcgaaactgcactaacactcttatctcatgcttccatcccacaaaaattttggtgtt |
26592228 |
T |
|
| Q |
101 |
atgcttttcaaatggcagttcacctaattaattgtatgcccactcctcaatgtcacaacaaatgtcctcatgaaatcctttttggttccaaacccaatta |
200 |
Q |
| |
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|||| ||||||||| |||| |||| || ||| | ||||| || ||| | ||||| ||||| |||||||||||| | | ||||| || |||||||||| |
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| T |
26592227 |
atgcatttcaaatgtcagtctacctcataaatcgcatgcctacacctaagtgtcaaaacaagtgtcctcatgaactaatctttggatcacaacccaatta |
26592128 |
T |
|
| Q |
201 |
tctcaattttcgtgtttttgggagtctttgtta |
233 |
Q |
| |
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|||| ||||||| ||||| ||||| ||||| |
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| T |
26592127 |
caacaatcttcgtgtatttggaagtctatgtta |
26592095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 1702114 - 1702331
Alignment:
| Q |
4 |
gaacacattggcattgctgaacgcaaacaccgccatatagtagaaactgctctcacacttctctctcactcttctgtacctcaaacattctggtgttatg |
103 |
Q |
| |
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||||| ||||| ||||| ||||||||||| || |||||||||||||| | ||||| || | ||||||||| ||| || |||| |||||||||||||| |
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| T |
1702114 |
gaacatattggtattgcagaacgcaaacatcgtcatatagtagaaacatcgctcaccctcatgtctcactctcatgttccacaaaaattctggtgttatg |
1702213 |
T |
|
| Q |
104 |
cttttcaaatggcagttcacctaattaattgtatgcccactcctcaatgtcacaacaaatgtcctcatgaaatcctttttggttccaaacccaattatct |
203 |
Q |
| |
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| || |||||||| || | |||| ||| | ||||| || | || | | |||||||||||||||||||| || |||||||||| || |||||||| |
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| T |
1702214 |
ccttccaaatggcggtgtatttaataaatcgcatgccaacaacacatcttaaaaacaaatgtcctcatgaaattctgtttggttccactcctaattatct |
1702313 |
T |
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| Q |
204 |
caattttcgtgtttttgg |
221 |
Q |
| |
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||| |||| || ||||| |
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| T |
1702314 |
taatcttcgagtctttgg |
1702331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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