View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_125 (Length: 244)
Name: NF1304_high_125
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_125 |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 244
Target Start/End: Original strand, 19840478 - 19840701
Alignment:
| Q |
21 |
acatcatcatccttaccaccacagccaattaaagaaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaatttgcggcggagataa |
120 |
Q |
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| T |
19840478 |
acatcatcatccttaccaccacagccaattaaagaaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaattcgcggcggagataa |
19840577 |
T |
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| Q |
121 |
gggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcgtatttagcaagagg |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
19840578 |
gggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcttatttagcaagagg |
19840677 |
T |
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| Q |
221 |
gtcattggctgtgttgaattttcc |
244 |
Q |
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||||||||||||||||||||||| |
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| T |
19840678 |
ttcattggctgtgttgaattttcc |
19840701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 45 - 244
Target Start/End: Complemental strand, 19720091 - 19719892
Alignment:
| Q |
45 |
ccaattaaagaaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaatttgcggcggagataagggactcaacaagaaaaggggcta |
144 |
Q |
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||||||||||||||||| | |||||| |||||||| || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19720091 |
ccaattaaagaaagtaacacaagggtatttagaggagtacgaagaaggccatgggggaaattcgcggcggagataagggactcaacaagaaaaggggcta |
19719992 |
T |
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| Q |
145 |
gagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcgtatttagcaagagggtcattggctgtgttgaattttcc |
244 |
Q |
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| T |
19719991 |
gagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagctgcttttttagcaagaggttcattggcagtgttgaattttcc |
19719892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 244
Target Start/End: Complemental strand, 19893002 - 19892783
Alignment:
| Q |
25 |
catcatccttaccaccacagccaattaaagaaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaatttgcggcggagataaggga |
124 |
Q |
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|||||||||| |||| || |||||||||||||||| ||||||||| ||||||| || ||| |||||||||||||||||| ||||| ||||||||||| |
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| T |
19893002 |
catcatccttgccactaccagcaattaaagaaagtaacaaaagggtgcttagaggagtacgaagaaggccatgggggaaattcgcggccgagataaggga |
19892903 |
T |
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| Q |
125 |
ctcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcgtatttagcaagagggtca |
224 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| | || ||||| ||| ||| |
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| T |
19892902 |
ctcgacaagaaaaggggctagggtatggcttggaacattcaacacggaggaagaagccgctttagcttatgaccaagccgctttttcagcaaaaggttca |
19892803 |
T |
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| Q |
225 |
ttggctgtgttgaattttcc |
244 |
Q |
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||||| |||||||||||||| |
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| T |
19892802 |
ttggcagtgttgaattttcc |
19892783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 48 - 244
Target Start/End: Original strand, 38862371 - 38862567
Alignment:
| Q |
48 |
attaaagaaagtaataaaagggtgtttagaggtataagaacaaggccatgggggaaatttgcggcggagataagggactcaacaagaaaaggggctagag |
147 |
Q |
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||||| |||||||| ||||| | |||||||| ||||||| ||||||||||| |||||||| ||||||||||| || |||||||||||||| | ||||| |
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| T |
38862371 |
attaaggaaagtaagaaaagagcatttagaggagtaagaactaggccatggggaaaatttgccgcggagataagagattcaacaagaaaaggtgttagag |
38862470 |
T |
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| Q |
148 |
tatggcttggaacattcaacacggccgaagaagctgctttagcttacgaccaagccgcgtatttagcaagagggtcattggctgtgttgaattttcc |
244 |
Q |
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| ||| ||||||||||| |||||||||||| ||||||||||||||| || ||||| || | || | ||||||| |||||||| |||||||||||||| |
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| T |
38862471 |
tgtggattggaacattcgacacggccgaagcagctgctttagcttatgatcaagcagctttttcaacaagaggttcattggcagtgttgaattttcc |
38862567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 38830698 - 38830804
Alignment:
| Q |
96 |
tgggggaaatttgcggcggagataagggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagcttacg |
195 |
Q |
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||||| ||||| || || |||||||||||| |||||||||| || | | | || ||| |||||||||| | || || |||| ||||||||||||||| | |
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| T |
38830698 |
tggggaaaattcgcagcagagataagggacacaacaagaaatggtgttcgtgtgtggattggaacatttgatacagctgaagcagctgctttagcttatg |
38830797 |
T |
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| Q |
196 |
accaagc |
202 |
Q |
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||||||| |
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| T |
38830798 |
accaagc |
38830804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 244
Target Start/End: Complemental strand, 30624012 - 30623852
Alignment:
| Q |
84 |
agaacaaggccatgggggaaatttgcggcggagataagggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctg |
183 |
Q |
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|||| ||| |||||||| ||||| || ||||| ||||| ||||||||||||||||| | |||||| ||| |||| ||||| | || || |||| |||| |
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| T |
30624012 |
agaagaagaccatggggaaaattcgcagcggaaataagagactcaacaagaaaaggtgttagagtttggattggtacatttgatacagctgaagctgctg |
30623913 |
T |
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| Q |
184 |
ctttagcttacgaccaagccgcgtatttagcaagagggtcattggctgtgttgaattttcc |
244 |
Q |
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|||||||||| || ||||| || | | | ||||||| ||| |||| |||||||||||||| |
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| T |
30623912 |
ctttagcttatgatcaagcagctttatcaacaagaggatcaatggcagtgttgaattttcc |
30623852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 244
Target Start/End: Complemental strand, 30629634 - 30629483
Alignment:
| Q |
93 |
ccatgggggaaatttgcggcggagataagggactcaacaagaaaaggggctagagtatggcttggaacattcaacacggccgaagaagctgctttagctt |
192 |
Q |
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|||||||| ||||| || ||||| ||||| |||||||| ||||| || | |||||| ||| |||| ||||| | || || |||| ||| |||||||||| |
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| T |
30629634 |
ccatggggaaaattcgcagcggaaataagagactcaactagaaatggtgttagagtttggattggtacatttgatacagctgaagcagcagctttagctt |
30629535 |
T |
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| Q |
193 |
acgaccaagccgcgtatttagcaagagggtcattggctgtgttgaattttcc |
244 |
Q |
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| || ||||| || | | | ||||||| ||| |||| |||||||||||||| |
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| T |
30629534 |
atgatcaagcagctttatcaacaagaggatcaatggcagtgttgaattttcc |
30629483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 124
Target Start/End: Original strand, 18652896 - 18652946
Alignment:
| Q |
74 |
tagaggtataagaacaaggccatgggggaaatttgcggcggagataaggga |
124 |
Q |
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||||||| |||| | ||||||||||||||||||||| || ||||||||||| |
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| T |
18652896 |
tagaggtgtaaggagaaggccatgggggaaatttgcagctgagataaggga |
18652946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 4417906 - 4417950
Alignment:
| Q |
141 |
gctagagtatggcttggaacattcaacacggccgaagaagctgct |
185 |
Q |
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|||||||||||||||||||||||| | || || |||||||||||| |
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| T |
4417906 |
gctagagtatggcttggaacattccaaacagctgaagaagctgct |
4417950 |
T |
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