View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_127 (Length: 233)
Name: NF1304_high_127
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_127 |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 106
Target Start/End: Original strand, 4556997 - 4557094
Alignment:
| Q |
9 |
actagttcatcactcacaacttcagttatcaaatctttaaagatcagccgctcgatatccaacaccatatttggtatctcgctgaaacaattagtcca |
106 |
Q |
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| T |
4556997 |
actagttcatcactcacaacttcagttatcaaatctttaaagatcaaccgctcaatatccaacaccatattcggtatctcgctgcaacagttagtcca |
4557094 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 5023215 - 5023282
Alignment:
| Q |
21 |
ctcacaacttcagttatcaaatctttaaagatcagccgctcgatatccaacaccatatttggtatctc |
88 |
Q |
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| T |
5023215 |
ctcacaacttcagttatcaaatctttgaagatcaatctttcaatatccaacacaacatttggtatctc |
5023282 |
T |
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