View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_128 (Length: 229)
Name: NF1304_high_128
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_128 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 19840983 - 19841071
Alignment:
| Q |
125 |
atttgtttagtttgtctattttccatgctcttggagttcttcatcaacttggaattaatcttaattcatgatgacatgataaatgttcc |
213 |
Q |
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| T |
19840983 |
atttgtttagtttgtctattttccatgctcttagagttcttcatcaacttggaattaatcttaattcatgatgacatgataaatgttcc |
19841071 |
T |
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Target: chr1 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 47907295 - 47907376
Alignment:
| Q |
20 |
ggaagtgtttcggtgttttggagacaaggtttggataaggtcatattcaaaatgtattgtaaatagcattgtatttaaagtt |
101 |
Q |
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| T |
47907295 |
ggaagtgtttcggtgttttggagacaaggtttggataaggtcatattcaaaatgtattgtaaatagcattgtatttaaagtt |
47907376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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