View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_17 (Length: 547)
Name: NF1304_high_17
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 11 - 519
Target Start/End: Original strand, 32731625 - 32732139
Alignment:
| Q |
11 |
cagagaattcagaaaagcctttcccatttacctatataataaaccaaaataaatgaaacattagtataaagcaattagccctagctttattactacaaca |
110 |
Q |
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| T |
32731625 |
cagagaattcagaaaagcctttcccatttacctatataataaaccaaaataaatgaaacattagtataaagcaattagccctagctttattactacaaca |
32731724 |
T |
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| Q |
111 |
tggtactactagttagtatatgagtttataaa-----gatacactgcattaataaaacattggataaaagaatgttgaaccttaagagctgggttggcta |
205 |
Q |
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| T |
32731725 |
tggtactactagttagtatatgagtttataaaataaagatacgctgcattaataaaacattggataaaagaatgttgaaccttaagagctgggttggcta |
32731824 |
T |
|
| Q |
206 |
cagagaaagtagccgaagccatgattaagcctacaaggaagaagaagttggagtatagagtcttgaagggaagcaaattcttagttatatgttatgttac |
305 |
Q |
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| T |
32731825 |
cagagaaagtagccgaagccatgattaagcctacaaggaagaagaagttggagtatagagtcttgaagggaagcaaattcttagttatatgttatgttac |
32731924 |
T |
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| Q |
306 |
tataaagtgtagtaagatgtgggtacgtggatgtgtggttgtgactcatgaacccaaccaagtaaggattagattttggatagcattttcattcaatgaa |
405 |
Q |
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| T |
32731925 |
tataaagtgtagtaagatgtgggtacgtggatgtgtggttgtgactcatgaacccaaccaagtaaggattagattttggatagcattttcattcaatgaa |
32732024 |
T |
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| Q |
406 |
tggttgtaattcatgctttgtttttgtgcttgtagtaagtccaatcatgaatgtgatcttactctcactcactca-nnnnnnncctattgtaatatgatg |
504 |
Q |
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| T |
32732025 |
tggttgtaattcatgctttgtttttgtgcttgtagtaagtccaatcatgaatgtgatcttactctcactcactcattttttttgctattgtaatatgatg |
32732124 |
T |
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| Q |
505 |
gttgggcatgaatct |
519 |
Q |
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| T |
32732125 |
gttgggcatgaatct |
32732139 |
T |
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