View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_2 (Length: 711)
Name: NF1304_high_2
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 385 - 682
Target Start/End: Original strand, 5172372 - 5172668
Alignment:
| Q |
385 |
ctgagacaacaaatatgtacataatatgccaatttagaggtcttcattatagtaacagggattgcttcatagctattttggttgggtttgtggcttttgc |
484 |
Q |
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| T |
5172372 |
ctgagacaacaaatatgtacataatatgccaatttagaggtcttcattatagtaacagggattgcttcatagctattttggttggctttgtggattttgc |
5172471 |
T |
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| Q |
485 |
tgaaaaatactcgttttctttttagttataaagaatcaacttctgatgaattatttgatatagttaaaaatcgagtttgatgtagattaaatcaaagatg |
584 |
Q |
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| T |
5172472 |
tgaaaaatacacgttttctttt-agttataaagaatcaacttctgatgaattatttgatatagttaaaaatcgagtttgatgtagattaaatcaaagatg |
5172570 |
T |
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| Q |
585 |
ctgtcttcggttagtgttgatgttttacaaataacatcgcttttaagagcaagaatgtgaaaacatacaaatttgtttgccactactaatgtgaaaac |
682 |
Q |
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| T |
5172571 |
ttgtcttcggttagtgttgatgttttacaaataacatcgcttttaagagcaagaatgtgaaaacatacaaatttgtttgccactactaacgtgaaaac |
5172668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 106 - 363
Target Start/End: Complemental strand, 5172342 - 5172085
Alignment:
| Q |
106 |
ttatctaccaaccaaactagaacattacaatgaattgagatttgattgatacactgtttcatgttagttaaacatgagtcacatctatccagcaatgctc |
205 |
Q |
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| T |
5172342 |
ttatctaccaaccaaactaaaacattacaatgaattgagatttgattgatacactgtttcatgttagttaaacatgagtcacatctatccagcaatgctc |
5172243 |
T |
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| Q |
206 |
gaagactaactcaaaaatatcttattgtctcgcattatcgcataaaccaaaacaaagatgctactatccatcaaattcaaaggttcaaaaccatcaaatt |
305 |
Q |
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| T |
5172242 |
gaacactaactcaaaaatatcttattgtctcgcattatcgcataaaccaaaacaaagatgctactatccatcaaattcaaaggttcaaaaccatcaaatt |
5172143 |
T |
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| Q |
306 |
cttgtgcattattgtgggacattattgcgctatgagaggtggaagatccaagatgata |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5172142 |
cttgtgcattattgtgggacattattgcgctatgagaggtggaagatccaagatgata |
5172085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 7871011 - 7871112
Alignment:
| Q |
7 |
aacatcacctactggtagtacttgtataattttccacaccttaccttaatataaggcttttgacttaacaaaagagtactagtactacaagacttagtat |
106 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7871011 |
aacatcacctacttgtagtacttgtataattttccacaccttaccttaatataaggcttttgacttaacaaaagagtactagtactacaagacttagtat |
7871110 |
T |
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| Q |
107 |
ta |
108 |
Q |
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|| |
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| T |
7871111 |
ta |
7871112 |
T |
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Back To:
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