View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1304_high_26 (Length: 519)

Name: NF1304_high_26
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1304_high_26
NF1304_high_26
[»] chr2 (3 HSPs)
chr2 (180-373)||(25293664-25293855)
chr2 (460-519)||(25293942-25294001)
chr2 (43-152)||(21195640-21195749)
[»] chr7 (5 HSPs)
chr7 (48-118)||(27776180-27776250)
chr7 (43-152)||(33181174-33181283)
chr7 (43-120)||(35513469-35513546)
chr7 (48-100)||(48984145-48984197)
chr7 (83-152)||(2495800-2495869)
[»] chr8 (4 HSPs)
chr8 (43-152)||(11819779-11819888)
chr8 (43-152)||(27750733-27750842)
chr8 (43-152)||(33727837-33727946)
chr8 (58-152)||(6536538-6536632)
[»] chr1 (2 HSPs)
chr1 (43-152)||(6122797-6122906)
chr1 (48-121)||(9165190-9165263)
[»] chr4 (2 HSPs)
chr4 (52-152)||(8030168-8030268)
chr4 (48-99)||(31826617-31826668)
[»] chr3 (3 HSPs)
chr3 (48-99)||(8075144-8075195)
chr3 (43-99)||(19341804-19341860)
chr3 (51-139)||(32651415-32651503)
[»] chr5 (1 HSPs)
chr5 (48-123)||(21549130-21549205)
[»] scaffold0300 (1 HSPs)
scaffold0300 (44-93)||(4344-4393)
[»] chr6 (2 HSPs)
chr6 (55-152)||(20213056-20213153)
chr6 (55-152)||(22107079-22107176)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 5e-94; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 180 - 373
Target Start/End: Original strand, 25293664 - 25293855
Alignment:
Q  180 aagaccttgctggcaaacatttcacgagtataatctaatctaaactaaggtagaccccacattaattggcacctctcctagttcaacctctgcgtgtcat 279  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  25293664 aagaccttgctggcagacatttcacgagtataatctaatctaaactaaggtagaccccacattaattggcacctctcctagttcaacctctgcgt--cat 25293761  T
Q  280 gaacaacctaactcactactctcctctcctcaatggcttcctccataacccaacaaccaccactactcccctctctccaccacccaattctcaa 373  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  25293762 gaacaacctaactcactactctcctctcctcaatggcttcctccataacccaacaaccaccaccactcccctctctccaccacccaattctcaa 25293855  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 460 - 519
Target Start/End: Original strand, 25293942 - 25294001
Alignment:
Q  460 agctaccaaaccccaccatcaccgaccgcatcttcatggacttcagcctctgccccaact 519  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25293942 agctaccaaaccccaccatcaccgaccgcatcttcatggacttcagcctctgccccaact 25294001  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 21195749 - 21195640
Alignment:
Q  43 ccatctgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatgggtta 142  Q
    |||| |||||||||||||||||||| |||||| ||||   |||||||||||||||||  ||| | |||| |||  ||||||  ||||||| |||||| ||    
T  21195749 ccatttgggttgccctagtggtataggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggcta 21195650  T
Q  143 aattagcttc 152  Q
    | ||||||||    
T  21195649 atttagcttc 21195640  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 48 - 118
Target Start/End: Original strand, 27776180 - 27776250
Alignment:
Q  48 tgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttc 118  Q
    ||||||| ||| |||||||||||||||||||| | ||||||||||||||| || ||| | |||||||||||    
T  27776180 tgggttggcctggtggtatacgcttgggacttgagagtgtgctcctcctcgaagtctcaggttcaattttc 27776250  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 33181283 - 33181174
Alignment:
Q  43 ccatctgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatgggtta 142  Q
    |||| |||||||||||||||||||| |||||||||||   ||||||||||  ||||| |||| | |||| |||  ||||||  ||||||| | |||| ||    
T  33181283 ccatttgggttgccctagtggtataggcttgggacttgggagtgtgctccaactcaagatctcaggttcgattccctctagtgtcaatttgggtgggcta 33181184  T
Q  143 aattagcttc 152  Q
    | ||||||||    
T  33181183 atttagcttc 33181174  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 120
Target Start/End: Original strand, 35513469 - 35513546
Alignment:
Q  43 ccatctgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctc 120  Q
    |||| ||||||| |||||||||||  ||||||||||| | ||||||||||||||| | |||| | |||| ||||||||    
T  35513469 ccatttgggttggcctagtggtatttgcttgggacttgagagtgtgctcctcctcgatatctcatgttcgattttctc 35513546  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 100
Target Start/End: Complemental strand, 48984197 - 48984145
Alignment:
Q  48 tgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaa 100  Q
    |||||||| ||||||||||| |||||||||||   ||||||||||||||||||    
T  48984197 tgggttgctctagtggtataggcttgggacttgggagtgtgctcctcctcaaa 48984145  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 152
Target Start/End: Complemental strand, 2495869 - 2495800
Alignment:
Q  83 agtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatgggttaaattagcttc 152  Q
    |||||||||||||| ||||||| | |||| ||| ||||||  ||||||||| ||||||||| ||| ||||    
T  2495869 agtgtgctcctccttaaaatctcaggttcgattatctctaatatcaatttaaatgggttaatttaacttc 2495800  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 11819779 - 11819888
Alignment:
Q  43 ccatctgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatgggtta 142  Q
    |||| |||||||||||||||||||| |||||||||||   |||||||||||||||||  ||| | |||| |||  ||||||  ||||||| | |||| ||    
T  11819779 ccatttgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgattcactctagtgtcaatttgggtgggcta 11819878  T
Q  143 aattagcttc 152  Q
    | ||||||||    
T  11819879 atttagcttc 11819888  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 27750733 - 27750842
Alignment:
Q  43 ccatctgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatgggtta 142  Q
    |||| ||||||||||| |||||||| |||||||||||   |||||||||||||||||  ||| | |||| |||  ||||||  ||||||| |||||  ||    
T  27750733 ccatttgggttgccctcgtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatggacta 27750832  T
Q  143 aattagcttc 152  Q
    | ||||||||    
T  27750833 atttagcttc 27750842  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 33727946 - 33727837
Alignment:
Q  43 ccatctgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatgggtta 142  Q
    |||| |||||||||||||||||||| | ||| |||||   |||||||||||||||||  ||| | |||| |||  ||||||  ||||||| |||||| ||    
T  33727946 ccatttgggttgccctagtggtataggtttgagacttggaagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggcta 33727847  T
Q  143 aattagcttc 152  Q
    | ||||||||    
T  33727846 atttagcttc 33727837  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 58 - 152
Target Start/End: Original strand, 6536538 - 6536632
Alignment:
Q  58 tagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatgggttaaattagcttc 152  Q
    |||||||||  ||||||||| ||  |||||||||||||||||  ||| | |||||||| ||||| |   |||||||| |||||||| ||||||||    
T  6536538 tagtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttcaattctctctggtgccaatttaggtgggttaatttagcttc 6536632  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 43 - 152
Target Start/End: Original strand, 6122797 - 6122906
Alignment:
Q  43 ccatctgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatgggtta 142  Q
    |||| |||||||||||||||||||| |||||||||||   |||||||||||||||||  ||| | |||| |||  ||||||  ||||||| | |||| ||    
T  6122797 ccatttgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttgggtgggcta 6122896  T
Q  143 aattagcttc 152  Q
    | ||||||||    
T  6122897 atttagcttc 6122906  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 9165263 - 9165190
Alignment:
Q  48 tgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctct 121  Q
    ||||||| |||||||||||  ||||||||| |   |||||||||||||||||| ||| | |||||||| |||||    
T  9165263 tgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcaggttcaattctctct 9165190  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 52 - 152
Target Start/End: Complemental strand, 8030268 - 8030168
Alignment:
Q  52 ttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatgggttaaattagctt 151  Q
    |||||||||||||||| |||||||||||   |||||||||||||||||  ||| |||||| |||  ||||||  ||||||| | |||| ||| |||||||    
T  8030268 ttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaagttcgattccctctagtgtcaatttgggtgggctaatttagctt 8030169  T
Q  152 c 152  Q
    |    
T  8030168 c 8030168  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 99
Target Start/End: Original strand, 31826617 - 31826668
Alignment:
Q  48 tgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaa 99  Q
    |||||||||||||||||||| |||||||| ||   |||||||||||||||||    
T  31826617 tgggttgccctagtggtataggcttgggatttgcgagtgtgctcctcctcaa 31826668  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 99
Target Start/End: Complemental strand, 8075195 - 8075144
Alignment:
Q  48 tgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaa 99  Q
    |||||||||||||||||||| |||||||||||   |||||||||||||||||    
T  8075195 tgggttgccctagtggtataggcttgggacttgggagtgtgctcctcctcaa 8075144  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 99
Target Start/End: Original strand, 19341804 - 19341860
Alignment:
Q  43 ccatctgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaa 99  Q
    |||| ||||||||||||||||||||  |||| |||||   |||||||||||||||||    
T  19341804 ccatttgggttgccctagtggtatagacttgagacttgggagtgtgctcctcctcaa 19341860  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 51 - 139
Target Start/End: Complemental strand, 32651503 - 32651415
Alignment:
Q  51 gttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatggg 139  Q
    |||| |||||||||||  ||||||||| |   ||||||||||||||||| |||| |  ||| ||| |||||||  ||||||||||||||    
T  32651503 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaagatctcagattcgattctctctagtgtcaatttagatggg 32651415  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 123
Target Start/End: Complemental strand, 21549205 - 21549130
Alignment:
Q  48 tgggttgccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctag 123  Q
    ||||||| |||||||||||  ||||||||| |   |||||||||||||| ||| ||| |||||| |||||||||||    
T  21549205 tgggttggcctagtggtattggcttgggacctgggagtgtgctcctccttaaagtctcaagttcgattttctctag 21549130  T

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Target: scaffold0300 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 4344 - 4393
Alignment:
Q  44 catctgggttgccctagtggtatacgcttgggacttaatagtgtgctcct 93  Q
    |||||||||||||||||||||||| |||||||| ||   |||||||||||    
T  4344 catctgggttgccctagtggtataggcttgggatttgggagtgtgctcct 4393  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 20213056 - 20213153
Alignment:
Q  55 ccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatgggttaaattagcttc 152  Q
    ||||||||||||||||||||||| |   |||||||||||||||||  ||| | |||| |||  ||||||  ||||||| | |||| ||| ||||||||    
T  20213056 ccctagtggtatacgcttgggacctgggagtgtgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttc 20213153  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 22107079 - 22107176
Alignment:
Q  55 ccctagtggtatacgcttgggacttaatagtgtgctcctcctcaaaatcttaagttcaattttctctaggatcaatttagatgggttaaattagcttc 152  Q
    ||||||||||||||||||||||| |   |||||||||||||||||  ||| | |||| |||  ||||||  ||||||| | |||| ||| ||||||||    
T  22107079 ccctagtggtatacgcttgggacctgggagtgtgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttc 22107176  T

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