View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1304_high_3 (Length: 707)
Name: NF1304_high_3
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 381 - 678
Target Start/End: Original strand, 5172372 - 5172668
Alignment:
| Q |
381 |
ctgagacaacaaatatgtacataatatgccaatttagaggtcttcattatagtaacagggattgcttcatagctattttggttgggtttgtggcttttgc |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
5172372 |
ctgagacaacaaatatgtacataatatgccaatttagaggtcttcattatagtaacagggattgcttcatagctattttggttggctttgtggattttgc |
5172471 |
T |
|
| Q |
481 |
tgaaaaatactcgttttctttttagttataaagaatcaacttctgatgaattatttgatatagttaaaaatcgagtttgatgtagattaaatcaaagatg |
580 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5172472 |
tgaaaaatacacgttttctttt-agttataaagaatcaacttctgatgaattatttgatatagttaaaaatcgagtttgatgtagattaaatcaaagatg |
5172570 |
T |
|
| Q |
581 |
ctgtcttcggttagtgttgatgttttacaaataacatcgcttttaagagcaagaatgtgaaaacatacaaatttgtttgccactactaatgtgaaaac |
678 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5172571 |
ttgtcttcggttagtgttgatgttttacaaataacatcgcttttaagagcaagaatgtgaaaacatacaaatttgtttgccactactaacgtgaaaac |
5172668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 106 - 359
Target Start/End: Complemental strand, 5172342 - 5172085
Alignment:
| Q |
106 |
ttatctaccaaccaaactagaacattacaatgaattgagatttgattgatacactgtttcatgttagttaaacatgagtcacatctatccagcaatgctc |
205 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5172342 |
ttatctaccaaccaaactaaaacattacaatgaattgagatttgattgatacactgtttcatgttagttaaacatgagtcacatctatccagcaatgctc |
5172243 |
T |
|
| Q |
206 |
gaagactaactcaaaaatatcttattgtctcgcattatcgcataaaccaaaacaaagatg-gac-at-catc-aattcaaaggttcaaaaccatcaaatt |
301 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| ||||||||||||||||||||||||||| |
|
|
| T |
5172242 |
gaacactaactcaaaaatatcttattgtctcgcattatcgcataaaccaaaacaaagatgctactatccatcaaattcaaaggttcaaaaccatcaaatt |
5172143 |
T |
|
| Q |
302 |
cttgtgcattattgtgggacattattgcgctatgagaggtggaagatccaagatgata |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5172142 |
cttgtgcattattgtgggacattattgcgctatgagaggtggaagatccaagatgata |
5172085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 7871011 - 7871112
Alignment:
| Q |
7 |
aacatcacctactggtagtacttgtataattttccacaccttaccttaatataaggcttttgacttaacaaaagagtactagtactacaagacttagtat |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7871011 |
aacatcacctacttgtagtacttgtataattttccacaccttaccttaatataaggcttttgacttaacaaaagagtactagtactacaagacttagtat |
7871110 |
T |
|
| Q |
107 |
ta |
108 |
Q |
| |
|
|| |
|
|
| T |
7871111 |
ta |
7871112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University