View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_30 (Length: 509)
Name: NF1304_high_30
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 89 - 413
Target Start/End: Complemental strand, 12521164 - 12520861
Alignment:
| Q |
89 |
atttcaactttggagtaagattacaagtatgaagtcatgtcttttgccacataaattaggtatatttgtagcctagaatcatagacaatgcattaatttc |
188 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12521164 |
atttcaactttggagtaagattacaagtatgaagtcatgtcttttgccacataaattgggtatatttgtagcctagaatcatagacaatgcattaatttc |
12521065 |
T |
|
| Q |
189 |
gagttacaagtcataaatcagagaatttaaaaagtttgtaacaaccattttggttctgcatatggcgcattggttgtgtgcctcaacgcacaggtcgtgt |
288 |
Q |
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|||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12521064 |
gagttacaagtcataaatgagagaatttcaaaagtttgtaacaaccattttggttctgcacatggcgcattggttgtgtgcctcaacgcacaggtcgtgt |
12520965 |
T |
|
| Q |
289 |
ttgttgatgtcctttgaaattatgccttgtatgaaggcgcacaggtcgtgttccagggcgcactggtcgtacgccaaccactgcctattttcacaaattt |
388 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12520964 |
ttgttgatgtcctttgaaattatgccctttatgaaggcgcacaggt---------------------cgtacgccaaccactgcctattttcacaaattt |
12520886 |
T |
|
| Q |
389 |
tcttgaagcaagcacacggattgtg |
413 |
Q |
| |
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||||||||||||||||||| ||||| |
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| T |
12520885 |
tcttgaagcaagcacacgggttgtg |
12520861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 89 - 198
Target Start/End: Original strand, 29968460 - 29968569
Alignment:
| Q |
89 |
atttcaactttggagtaagattacaagtatgaagtcatgtcttttgccacataaattaggtatatttgtagcctagaatcatagacaatgcattaatttc |
188 |
Q |
| |
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|||| ||| |||||||||||||||||||||||||| || ||||||||| ||||||| | || ||||| || |||||||||||| |||| |||||| ||| |
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| T |
29968460 |
attttaacgttggagtaagattacaagtatgaagtgatatcttttgcctcataaatgatgtctatttataacctagaatcataaacaagacattaaattc |
29968559 |
T |
|
| Q |
189 |
gagttacaag |
198 |
Q |
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|||||||||| |
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| T |
29968560 |
gagttacaag |
29968569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 89 - 245
Target Start/End: Original strand, 53000580 - 53000735
Alignment:
| Q |
89 |
atttcaactttggagtaagattacaagtatgaagtcatgtcttttgccacataaattaggtatatttgtagcctagaatcatagacaatgcattaatttc |
188 |
Q |
| |
|
|||| |||||| ||||||||||||||| |||||| |||| ||||| || |||| ||| ||||| ||| ||||||||||||||| ||||||||||| |
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| T |
53000580 |
attttaactttagagtaagattacaagaatgaagagttgtcctttgct-cagaaatatggtctatttatagtttagaatcatagacaaggcattaatttc |
53000678 |
T |
|
| Q |
189 |
gagttacaagtcataaatcagagaatttaaaaagtttgtaacaaccattttggttct |
245 |
Q |
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|
| T |
53000679 |
gagttacaagccataaactatagaattccaaaggtttgtaacaaccatttttgttct |
53000735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 89 - 249
Target Start/End: Original strand, 31603712 - 31603868
Alignment:
| Q |
89 |
atttcaactttggagtaagattacaagtatgaagtcatgtcttttgccacataaattaggtatatttgtagcctagaatcatagacaatgcattaatttc |
188 |
Q |
| |
|
|||||||||| |||||| |||||||||| | |||||||||||||| ||||||| |||| ||||| ||||||| |||||| |||| | ||||| |
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| T |
31603712 |
atttcaacttaagagtaaatttacaagtataatctcatgtcttttgcctcataaatgaggtttatttatagcctaacatcatacacaagac----atttc |
31603807 |
T |
|
| Q |
189 |
gagttacaagtcataaatcagagaatttaaaaagtttgtaacaaccattttggttctgcat |
249 |
Q |
| |
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|||||||||| ||||| || |||||| ||| ||||||||||||| |||| ||||||||| |
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|
| T |
31603808 |
gagttacaagctataaaccatagaattctaaaggtttgtaacaaccgtttttgttctgcat |
31603868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 41700559 - 41700637
Alignment:
| Q |
165 |
aatcatagacaatgcattaatttcgagttacaagtcataaatcagagaatttaaaaagtttgtaacaaccattttggttc |
244 |
Q |
| |
|
||||||| |||||||||||| || |||||||||| |||||| ||||||||| ||| ||||||||||||| |||||||| |
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| T |
41700559 |
aatcatacacaatgcattaaatttgagttacaagccataaa-aagagaatttcaaagatttgtaacaaccaatttggttc |
41700637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 151 - 239
Target Start/End: Original strand, 22826529 - 22826617
Alignment:
| Q |
151 |
tatttgtagcctagaatcatagacaatgcattaatttcgagttacaagtcataaatcagagaatttaaaaagtttgtaacaaccatttt |
239 |
Q |
| |
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||||| ||| ||| ||||||||||| |||||| ||||| ||||||||| ||||| ||| |||| |||||||||||||||||||||| |
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| T |
22826529 |
tatttatagtctaaaatcatagacatgtcattaaattcgatttacaagtcttaaattagaaaattgcaaaagtttgtaacaaccatttt |
22826617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 4284827 - 4284713
Alignment:
| Q |
91 |
ttcaactttggagtaagattacaagtatgaagtcatgtcttttgccacataaattaggtatatttgtagcctagaatcatagacaatgcattaatttcga |
190 |
Q |
| |
|
|||||||| ||||||| |||||||| || |||||| ||||||| || |||| | || ||||| |||||||||||||||||||| |||| | |||| |
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| T |
4284827 |
ttcaacttaagagtaagtttacaagtgtgccatcatgtgttttgcctcagaaatgaagtctatttatagcctagaatcatagacaaaatattattctcga |
4284728 |
T |
|
| Q |
191 |
gttacaagtcataaa |
205 |
Q |
| |
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||||||| ||||||| |
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| T |
4284727 |
gttacaattcataaa |
4284713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 269 - 323
Target Start/End: Original strand, 11645365 - 11645419
Alignment:
| Q |
269 |
cctcaacgcacaggtcgtgtttgttgatgtcctttgaaattatgccttgtatgaa |
323 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||| | ||||||| |
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| T |
11645365 |
cctcaacgcacgaatcgtgcttgttgatgtcctttgaaattatgcttagtatgaa |
11645419 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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