View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_33 (Length: 494)
Name: NF1304_high_33
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_33 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 171 - 438
Target Start/End: Complemental strand, 45450963 - 45450696
Alignment:
| Q |
171 |
agagttgttaaccaattttatttctttgttaaccaaaaaattaaatgttgttaaccacttttttaatatatatttcactaaccactttgtatgctcagat |
270 |
Q |
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| T |
45450963 |
agagttgttaaccaattttatttctttgttaaccacaaaattaaatgttgttaaccacttttttaatatatatttcactaaccactttgtatgctcggat |
45450864 |
T |
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| Q |
271 |
aaatacaccacttttttacagctttaaatagggctgtgatgtctcatgcatccaactaattgcattcgatctcatgaccttttgttgcattatatcctaa |
370 |
Q |
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| T |
45450863 |
aaatacaccacttttttacagctttaaatagggctgtgatgtctcatgcatccaactaattgcattcgatctcatgaccttttgttgcattatatcctaa |
45450764 |
T |
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| Q |
371 |
tcacttgaactcgtggtagcttatctcttctcatttagaaccgaattattaatatcttgctacacaac |
438 |
Q |
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| T |
45450763 |
tcacttgaactcatggtagcttacctcttctcatttagaaccgaattattaatatcttgctacacaac |
45450696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 481
Target Start/End: Complemental strand, 45450687 - 45450659
Alignment:
| Q |
453 |
gttcttttccgaggcaacacaactggttc |
481 |
Q |
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| T |
45450687 |
gttcttttccgaggcaacacaactggttc |
45450659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 4742176 - 4742132
Alignment:
| Q |
215 |
atgttgttaaccacttttttaatatatatttcactaaccactttg |
259 |
Q |
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| T |
4742176 |
atgttattaaccacttttttaccatatatttcattaaccactttg |
4742132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 4751440 - 4751396
Alignment:
| Q |
215 |
atgttgttaaccacttttttaatatatatttcactaaccactttg |
259 |
Q |
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| T |
4751440 |
atgttattaaccacttttttaccatatatttcattaaccactttg |
4751396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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