View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_38 (Length: 467)
Name: NF1304_high_38
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_38 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 30 - 460
Target Start/End: Complemental strand, 427296 - 426865
Alignment:
| Q |
30 |
attatatgtatattaaaatgaattggcttaaataaattacttaacaaagtgattcaatttcatgttgcttaagtaaaagatgaaatgttgttttgattat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
427296 |
attatatgtatattaaaatgaattggcttaaataaattacttaacaaagtgattcaatttcatgttgcttaagtaaaagatgaaatgttgttttgattat |
427197 |
T |
|
| Q |
130 |
tcctttgttgtatattgttccagcctaggatatgtcccaatctaaactaacttgtgtacggatgaatttcacttgggtgatttaagtccggtgaatttga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
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| T |
427196 |
tcctttgttgtatattgttccagcctaggatatgtcccaatctaaactaacttgtgtatggatgaatttcacttgggtgatttaagtccgatgaatttga |
427097 |
T |
|
| Q |
230 |
tatctttgtttatttttatttcttaaccaattatcctctcatctaaataatttattttaatagtttatctattcttaaagaaaaatgcaaatatatcaag |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
427096 |
tatctttgtttatttttatttcttaaccaattatcctctcatctaaataatttattttaatagtttatctattcttaaagaaaaatgctaatatatcaag |
426997 |
T |
|
| Q |
330 |
tgaaatgacgcctcacaaataca-tcctcaagtatatttctccttggcagctttttgttgacttccacattttcctatgactttccttgaattccgctcc |
428 |
Q |
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|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
426996 |
tgaaatgaagcctcacaaatacattcctcaagtatatttctccttggcagctttttgttaacttccacattttcctatgactttccttgaattccgctcc |
426897 |
T |
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| Q |
429 |
actctaatttgtaattggttgaatattattcg |
460 |
Q |
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|||||||||||||||||||||| |||| |||| |
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| T |
426896 |
actctaatttgtaattggttgattatttttcg |
426865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 29010155 - 29010220
Alignment:
| Q |
225 |
tttgatatctttgtttatttttatttcttaaccaattatcctctcatctaaataatttattttaat |
290 |
Q |
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|||||| |||||||| || ||||| | ||||||||| || ||||| | |||||||||||||||||| |
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| T |
29010155 |
tttgatgtctttgttcatatttatattttaaccaatcattctctcgtttaaataatttattttaat |
29010220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 34799704 - 34799664
Alignment:
| Q |
250 |
tcttaaccaattatcctctcatctaaataatttattttaat |
290 |
Q |
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||||||| |||||| |||||||||||||| ||||||||||| |
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|
| T |
34799704 |
tcttaacaaattatactctcatctaaatattttattttaat |
34799664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 381 - 455
Target Start/End: Original strand, 39077795 - 39077869
Alignment:
| Q |
381 |
ttttgttgacttccacattttcctatgactttccttgaattccgctccactctaatttgtaattggttgaatatt |
455 |
Q |
| |
|
|||||||||||||||| |||||| | ||||| |||||||||||||||||| |||||| ||||||||||| |||| |
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| T |
39077795 |
ttttgttgacttccaccttttcccacaacttttcttgaattccgctccactttaatttataattggttgattatt |
39077869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 450
Target Start/End: Complemental strand, 22211281 - 22211218
Alignment:
| Q |
387 |
tgacttccacattttcctatgactttccttgaattccgctccactctaatttgtaattggttga |
450 |
Q |
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| T |
22211281 |
tgacttccaccttttcccgtggcttcccttaaattccgctccactctaatttataattgattga |
22211218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 290
Target Start/End: Complemental strand, 37685262 - 37685222
Alignment:
| Q |
250 |
tcttaaccaattatcctctcatctaaataatttattttaat |
290 |
Q |
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||||||||| | || |||||||||||||||||||||||||| |
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| T |
37685262 |
tcttaaccattcattctctcatctaaataatttattttaat |
37685222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 265 - 297
Target Start/End: Original strand, 49177279 - 49177311
Alignment:
| Q |
265 |
ctctcatctaaataatttattttaatagtttat |
297 |
Q |
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||||||||||||||||||||||||||| ||||| |
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| T |
49177279 |
ctctcatctaaataatttattttaataatttat |
49177311 |
T |
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