View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_39 (Length: 463)
Name: NF1304_high_39
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_39 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 451; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 5 - 463
Target Start/End: Complemental strand, 49302572 - 49302114
Alignment:
| Q |
5 |
aaaatcatgtgaaaaacatcaaatcttttagccggctgattcagagtaaaatgtctcctcacagcccttactccttgcttgagcttcttatacttactct |
104 |
Q |
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| T |
49302572 |
aaaatcatgtgaaaaacatcaaatcttttagccggctgattcagagtaaaatgtctcctcacagcccttaccccttgcttgagcttcttatacttactct |
49302473 |
T |
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| Q |
105 |
ctggaatagcactaagaatctctttcaacctaggaatatctgaaacatccacctgcactgaaaatgcctcccattgcagcacatcaccgaagggcaacac |
204 |
Q |
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| T |
49302472 |
ctggaatagcactaagaatctctttcaacctaggaatatctgaaacatccacctgcactgaaaatgcctcccattgcagcacatcactgaagggcaacac |
49302373 |
T |
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| Q |
205 |
ataataatttgatagaatcacaggcacacattctgcataaattgattccacaattcttgggctagccacttcaaaaccacttggacaaagacagaacttg |
304 |
Q |
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| T |
49302372 |
ataataatttgatagaatcacaggcacacattctgcataaattgattccacaattcttgggctagccacttcaaaaccacttggacaaagacagaacttg |
49302273 |
T |
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| Q |
305 |
gagcttagcattatggaatagtagtctatgcctttagggagatactcattgacaagaatatctttgtctctgtttttccagtgttggagaagaattgggc |
404 |
Q |
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| T |
49302272 |
gagcttagcattatggaatagtagtctatgcctttagggagatactcattgacaagaatatctttgtctctgtttttccagtgttggagaagaattgggc |
49302173 |
T |
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| Q |
405 |
gaattgggccatgcataccacctgcaaagaaggcaagataccggcgtggggcgttctca |
463 |
Q |
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| T |
49302172 |
gaattgggccatgcataccacctgcaaagaaggcaagataccggcgtggggcgttctca |
49302114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 44629251 - 44629171
Alignment:
| Q |
224 |
acaggcacacattctgcataaattgattccacaattcttgggctagccacttcaaaaccacttggacaaagacagaacttg |
304 |
Q |
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| T |
44629251 |
acaggcacacattctgcaaatatagcttccactattcttggacttgctacttcataaccacttggacacaaacaaaacttg |
44629171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 291
Target Start/End: Original strand, 47727939 - 47728010
Alignment:
| Q |
220 |
aatcacaggcacacattctgcataaattgattccacaattcttgggctagccacttcaaaaccacttggaca |
291 |
Q |
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| T |
47727939 |
aatcacaggtacacacccagcattaattgcttccacaattcttggactagccacttcatatccacttggaca |
47728010 |
T |
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