View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_44 (Length: 437)
Name: NF1304_high_44
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 53480647 - 53480241
Alignment:
| Q |
16 |
atacattctaaaagatatcttcctattgaaattggcat-------------gcgcaacccccctacaccaataccatcgttatttgcagtattcacaatc |
102 |
Q |
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| T |
53480647 |
atacattctaagagatatcttcctattgaaattggcatctcctccatctccgctcaacccccctacaccaataccatcgttatttgcagtattcacaatc |
53480548 |
T |
|
| Q |
103 |
acatttttatccaaagataacttaacatgacctattaaatctctcacgcaatgccatcccactcactcgatgatctttccaaaacacagtgtcactacca |
202 |
Q |
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| T |
53480547 |
acatttttatccaaagataacttaacatgacctattaaatctctcacgcaatgccatcccactcactcaaggatctttccaaaacatagtgtcactacca |
53480448 |
T |
|
| Q |
203 |
tcgcccataatctttgaaagattattattaaaccaattaacatgaacaatggctttcatgatactaattaattgaatatccttccaccagatagaatcct |
302 |
Q |
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| T |
53480447 |
tcgcccataatctttgaaagattattattaaaccaattaacatgaacaatggctttcatgatactaattaattgaatatccttccaccaaataaaatcct |
53480348 |
T |
|
| Q |
303 |
tatgagatccatccaaaattctacagcaacacacactaatttacactataataccattattaaaccaactgcccttgtcattgtttcgcctccgacacca |
402 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
53480347 |
tatgagatccatccaaaattctacaacaacacacactaatttacactataataccattattaaaccaactgcccttggcattgtttcgcctccgacacca |
53480248 |
T |
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| Q |
403 |
catttct |
409 |
Q |
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||||||| |
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| T |
53480247 |
catttct |
53480241 |
T |
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