View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_49 (Length: 421)
Name: NF1304_high_49
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 9913623 - 9913717
Alignment:
| Q |
1 |
ttaagaacgtccacaatgaagcatcctttttagatgtttaagtgtgttttatatatatgtatacatacatgactcaatttctctaatttagtgtctcac |
99 |
Q |
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| T |
9913623 |
ttaagaacgtccacaatgaagcatcctttttagatgtttaagtgtgttt----tatatgtatacatacatcactcaatttctctaatttagtgtctcac |
9913717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 285 - 397
Target Start/End: Original strand, 9921209 - 9921314
Alignment:
| Q |
285 |
gtatttaatataaattttacactaaatatattcatttcatttttgttgatcgaatttttgcttatatttaagatcaaaataaatataatttgaaaatgtg |
384 |
Q |
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| T |
9921209 |
gtatttaatataaattttgaactaaatatattca-----tttttgttgatcggatttttacttatatttaagatcaaaagaa--ataatttgaaaatgtg |
9921301 |
T |
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| Q |
385 |
cataaaattgatg |
397 |
Q |
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| T |
9921302 |
cataaaattgatg |
9921314 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 9913808 - 9913892
Alignment:
| Q |
190 |
gaggaacccaaaaaagtgaagaaagtcacataatgaataaaatatattttcttcggccttaaatataagaaaaagttgagtcaac |
274 |
Q |
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| T |
9913808 |
gaggaacccaaaaaagtgaagagagtcacatagtaaataaaatatattttcttcaatctcaaatataagcaaaagttgagtcaac |
9913892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 5799662 - 5799612
Alignment:
| Q |
252 |
atataagaaaaagttgagtcaacaaaaatggatgtatttaatataaatttt |
302 |
Q |
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| T |
5799662 |
atataagaaaaagttgcgtcaacaaaaattaatgtatttgatttaaatttt |
5799612 |
T |
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