View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_50 (Length: 420)
Name: NF1304_high_50
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 29 - 411
Target Start/End: Complemental strand, 19135122 - 19134739
Alignment:
| Q |
29 |
aattactagttttgaaatgactacactaaacttcattgttttctcataagattggtatgtcatttaattaatacttccttttcctacctttgaaaatgca |
128 |
Q |
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| T |
19135122 |
aattactagttttgaaatgactatactaaacttcattgttttctcataagattgatatgtggtttaattaatacttcctttttctacctttgaaaatgca |
19135023 |
T |
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| Q |
129 |
ggtgatcatatatatgctggaaaaaggcaatggacgttgtgcaacagtcctgaaaccgtttattaatctacttgaatagttgcatgaagtgtgtctatat |
228 |
Q |
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| T |
19135022 |
ggtgatcatatatatgctggaaaaaggcaatggacgttgtgcaacagtcctgaaaccgtttattaatctacttgaatagttgcatgaagtgtgtctatat |
19134923 |
T |
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| Q |
229 |
agtaaagaaccattatatacatgcctacttttactaattaacaatgtctttaagttaaattagggttcttcagactgtgaactggaaaagaaccagcatt |
328 |
Q |
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| T |
19134922 |
agtaaagaaccattatatacatgcctacttttactaattaacaatgtctttaagttaaattagggttcttcagactgtgaactggaaaagaaccagcatt |
19134823 |
T |
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| Q |
329 |
tgctaccatacctcatgataatactattatcgtatcttttaataac-aactagtttctaaaccttactctttgtatttctctgc |
411 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19134822 |
tgcgaccatacctcatgataatactattatcgtatcttttaataacaaactagtttctaaaccttactctttgtatttctctgc |
19134739 |
T |
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