View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_55 (Length: 392)
Name: NF1304_high_55
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 28267834 - 28268152
Alignment:
| Q |
1 |
attatttcttgcaatccaaaaatgaaattaaatcctctggctcaggtccgcttccttgctttatcagcaacaattccaaatattgaggatctaggtattt |
100 |
Q |
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| T |
28267834 |
attatttcttgcaatccaaaaatgaaattaaatcctctggctcaggtccgcttcctcgctttatcagcaacaattccaaatattgaggatctaggtattt |
28267933 |
T |
|
| Q |
101 |
tctttttcacttgatgttgtcacaagagttaaaataacctataaacaaccatgggaaacatttcatgcaatatacttgctattgcagctaaatggctcct |
200 |
Q |
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| T |
28267934 |
tctttttcacttgatgttgtcacaagagttaaaataacctataaacaaccatgggaaacatttcatgcaatatacttgctattgcagctaaatggctcct |
28268033 |
T |
|
| Q |
201 |
ggttcctgaccaagggatcaaaaggtaattttccacctccatattcattatatgactttgtactataatgctccaagtcaatatccaaaaatatatttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28268034 |
ggttcctgaccaagggatcaaaaggtaattttccacctccatattcattatatgactttgtactataatgctccaagtcaatatccaaaaatatatttct |
28268133 |
T |
|
| Q |
301 |
tattgaatgtacacaggtt |
319 |
Q |
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||||||||||||||||||| |
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| T |
28268134 |
tattgaatgtacacaggtt |
28268152 |
T |
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