View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_60 (Length: 379)
Name: NF1304_high_60
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 79 - 350
Target Start/End: Complemental strand, 2910913 - 2910642
Alignment:
| Q |
79 |
acatcatcattagaaacggtagtcacccagttcacagtagaactaaaatgtacaccactatacattctcaaatccatcaaatacaacctcatagccaacc |
178 |
Q |
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| T |
2910913 |
acattatcattagaaacggtagtcacccagttcacagtagaactaaaatgtacaccactatacattctcaaatccatcaaatacaacctcatagccaacc |
2910814 |
T |
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| Q |
179 |
ttgtagcggtaaaacgaccatgcattctcgaatccctcgaatacaacctcatagccgtaacaggaaaattttgaatacttgtccaaactttatcaccgaa |
278 |
Q |
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| T |
2910813 |
tcatagccgtaaaacgaccacgcattctcgaatccctcgaatacaacctcatagccgtaacaggaaaattttgaatactcgtccaaactttatcaccgaa |
2910714 |
T |
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| Q |
279 |
actataaactctgacctcgccatgaataccatcacaatccaaggccacaaccttataagtgtgagttgaatt |
350 |
Q |
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| T |
2910713 |
aatataaactctcaccttgccatcaataccatcacaatccaaggccacaaccttataagtgtgagttgaatt |
2910642 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 297
Target Start/End: Original strand, 19637580 - 19637637
Alignment:
| Q |
240 |
aggaaaattttgaatacttgtccaaactttatcaccgaaactataaactctgacctcg |
297 |
Q |
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| T |
19637580 |
aggaaaactttgaatatttctccaaactttatcaccaaaactaaaaactctcacctcg |
19637637 |
T |
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