View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_61 (Length: 377)
Name: NF1304_high_61
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_61 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 42 - 377
Target Start/End: Original strand, 45102190 - 45102526
Alignment:
| Q |
42 |
gattattctcaaccgaactttggattatcatgacgcattttccttaggatccgtatgaagaagaagaagnnnnnnnnggcatatgaa-tgaagcaaataa |
140 |
Q |
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| T |
45102190 |
gattactctcgaccgaactttggattatcatgatgcatttttcttaggatccgtattaagaagaagaagaaaaaaaaggcatatgaaataaagcaaataa |
45102289 |
T |
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| Q |
141 |
tataggttacctaattccatgactaggtccacaagtaatgttctttatatcaacatcatagctcccggttccaatggacacacagtcatcacctatgaaa |
240 |
Q |
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| T |
45102290 |
tataggttacctaattccatgactaggtccacaagtaatgttctttatatcaacatcatagctcccggttccaatggacacacagtcatcacctatgaaa |
45102389 |
T |
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| Q |
241 |
gataaatccgccatgttttgttaatgtttttgatgcaataaacaaggatactgcaaaacaaatattttggcaactaaccattggaaatcacagaattata |
340 |
Q |
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| T |
45102390 |
gataaatccgccatgtattgttaatgtttttaatgcaataaacaaggatactgcaaaacaaatattttggcaactaaccattggaaatcacagaattata |
45102489 |
T |
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| Q |
341 |
tattttcacatcattggcatattctaagtgtatccca |
377 |
Q |
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| T |
45102490 |
tattttcacatcattggcatattctaagtgaatccca |
45102526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 38661868 - 38661774
Alignment:
| Q |
147 |
ttacctaattccatgactaggtccacaagtaatgttctttatatcaacatcatagctcccggttccaatggacacacagtcatcacctatgaaag |
241 |
Q |
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| T |
38661868 |
ttacctaatgccatgacctggtccacatgtgatattttttatatcaacatcatagcaaccagacccaatggaaacacagtcatcacctataaaag |
38661774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 373
Target Start/End: Complemental strand, 38661691 - 38661631
Alignment:
| Q |
313 |
actaaccattggaaatcacagaattatatattttcacatcattggcatattctaagtgtat |
373 |
Q |
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| T |
38661691 |
actaaccattggaaactacggaattatatattttcacatcattggtattttctatgtgtat |
38661631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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