View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_64 (Length: 372)
Name: NF1304_high_64
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_64 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 97 - 365
Target Start/End: Original strand, 3541336 - 3541604
Alignment:
| Q |
97 |
ttatcaactgtcacttcaactggctccctttggcatgctagatttggtcatccatcccctagagtccttacacaaatgttgtcaaattgtggtctgtcta |
196 |
Q |
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|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3541336 |
ttatcaactgtcacttcaactgtctccctctggcatgctagatttggtcatccatcccctagagtccttacacaaatgttgtcaaattgtggtgtgtcta |
3541435 |
T |
|
| Q |
197 |
ggaattttaccaaaaaatctttgcattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatt |
296 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3541436 |
ggaattttaacaacaaatctttgcattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatt |
3541535 |
T |
|
| Q |
297 |
tgaactcattttctctgatgtttggggaccatcccctataacgtccattaatggttacaagtattatct |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
3541536 |
tgaactcattttctctgatgtttggggaccatcccctataacgtccatcaatggttacaagtattatct |
3541604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 97 - 365
Target Start/End: Original strand, 5400361 - 5400629
Alignment:
| Q |
97 |
ttatcaactgtcacttcaactggctccctttggcatgctagatttggtcatccatcccctagagtccttacacaaatgttgtcaaattgtggtctgtcta |
196 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
5400361 |
ttatcaactgtcacttcaactgtatccctctggcatgctagatttggtcatccatcccctagagtccttacacaaatgttgtcaaattgtggcctgtcta |
5400460 |
T |
|
| Q |
197 |
ggaattttaccaaaaaatctttgcattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatt |
296 |
Q |
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||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5400461 |
ggaattttaacaagaaatctttgcattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatt |
5400560 |
T |
|
| Q |
297 |
tgaactcattttctctgatgtttggggaccatcccctataacgtccattaatggttacaagtattatct |
365 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
5400561 |
tgaactcattttctctgatgtttggggaccatcccctataacgtccattaatggttacaggtattatct |
5400629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 122 - 353
Target Start/End: Complemental strand, 26592788 - 26592557
Alignment:
| Q |
122 |
ccctttggcatgctagatttggtcatccatcccctagagtccttacacaaatgttgtcaaattgtggtctgtctaggaattttaccaaaaaatctttgca |
221 |
Q |
| |
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|||| ||||||||| ||||||||||||| | || | ||| || ||||||||||| || | || ||| | ||||||||||| | || ||| ||| || |
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| T |
26592788 |
ccctctggcatgctcgatttggtcatcctacacccaaagttctcacacaaatgttttctagttctggcttatctaggaatttgaataacaaaaattttca |
26592689 |
T |
|
| Q |
222 |
ttgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgtttgg |
321 |
Q |
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||||||||| |||||||| |||||||| || |||||||||||||||||||| || ||| ||||| ||||| | ||||| |||||||||||||||||| |
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| T |
26592688 |
ttgtaattcttgctctatcaataaaagccacaaacttcctttttctatatcatccataaaaactaattctcctctagaacttattttctctgatgtttgg |
26592589 |
T |
|
| Q |
322 |
ggaccatcccctataacgtccattaatggtta |
353 |
Q |
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||||||||||||||||| |||||||||||||| |
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| T |
26592588 |
ggaccatcccctataacatccattaatggtta |
26592557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 220 - 365
Target Start/End: Original strand, 1701748 - 1701893
Alignment:
| Q |
220 |
cattgtaattcctgctctattaataaaagtcataaacttcctttttctatatcttcaatacaaactttctctccatttgaactcattttctctgatgttt |
319 |
Q |
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||||||||||| ||| |||||||||||||||||| |||||||||||| | ||||| || |||| |||| ||||||| | || |||||||||| |
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| T |
1701748 |
cattgtaattcttgccatattaataaaagtcataagcttcctttttctgtttcttctatcaaaaccacagctcctcttgaactgttattttctgatgttt |
1701847 |
T |
|
| Q |
320 |
ggggaccatcccctataacgtccattaatggttacaagtattatct |
365 |
Q |
| |
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||||||| || ||||| || || || |||||||||| |||||||| |
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| T |
1701848 |
ggggaccctctcctatcacttcagttcatggttacaaatattatct |
1701893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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