View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_66 (Length: 368)
Name: NF1304_high_66
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_66 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 33115788 - 33115910
Alignment:
| Q |
29 |
aacatggaggtggatgcttggtgtagcagcattacctgctatactacaattgctactaatgttttggctgccagaatcacctcgttggttgtttcgaaag |
128 |
Q |
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| T |
33115788 |
aacatggaggtggatgcttggtgtagcagcattacctgctatactacaattgctactaatgttttggctgccagaatcacctcgttggttgtttcgaaag |
33115887 |
T |
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| Q |
129 |
gttagttaaatcatctatattgt |
151 |
Q |
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| T |
33115888 |
gttagttaaatcatctacattgt |
33115910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 190 - 289
Target Start/End: Original strand, 33115902 - 33116002
Alignment:
| Q |
190 |
ctacattgttttgtccaatgttgtcaatcaatagtttgttcaaatccgctac-aaaacagtgttttagcgatgctacaaccactatgtgacagaattttg |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||| || ||||||||||||||||| |
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| T |
33115902 |
ctacattgttttgtccaatgttgtcaatcaatagtttgttcaaatccgctacaaaaacagtgtcttagggatgctacaatcattatgtgacagaattttg |
33116001 |
T |
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| Q |
289 |
c |
289 |
Q |
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| |
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| T |
33116002 |
c |
33116002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 33116003 - 33116048
Alignment:
| Q |
310 |
ttgtctttacagggtaaagaggaggaaggaaaagcaattctgagaa |
355 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33116003 |
ttgtctctacagggtaaagaggaggaaggaaaagcaattctgagaa |
33116048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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