View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_71 (Length: 346)
Name: NF1304_high_71
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_71 |
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Alignment Details
Target: chr1 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 100 - 286
Target Start/End: Complemental strand, 34020368 - 34020171
Alignment:
| Q |
100 |
attttcaacactatttttattgattaaaattcatatgag-ctcatcaaatcatatgaatttcgtataaattttgtggaatccatgtaaattttaatcaat |
198 |
Q |
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| T |
34020368 |
attttcaacactatttttattgattaaaattcacattagtctcatcaaatcatatgaattttgtataaattttttggaatccatgtaaattttaattaat |
34020269 |
T |
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| Q |
199 |
gaaaaagtgtgttaaaa----------agtgtatgttgctagtactagtacattaatattattcaataattgctggttaactttatgctttgcatttt |
286 |
Q |
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| T |
34020268 |
aaaaaagtgtgttgaaaagtgtgagatagtgtatgttgctattactaatacattagtattattcaataattgctggttaactttatgctttggatttt |
34020171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 267 - 339
Target Start/End: Complemental strand, 34020158 - 34020086
Alignment:
| Q |
267 |
aactttatgctttgcattttatttttgattccagactgtccccaagttgtgtcacacgtactctcctatgata |
339 |
Q |
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| T |
34020158 |
aactttatgcttttgattttatttttgattccaaactgtccccaagttgtgtcacacgtactctcctaggata |
34020086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Complemental strand, 27195317 - 27195269
Alignment:
| Q |
162 |
tataaattttgtggaatccatgtaaattttaatcaatgaaaaagtgtgt |
210 |
Q |
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| T |
27195317 |
tataaatttggtggaatccatgtgaattttaatcaattaaaaagagtgt |
27195269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 232
Target Start/End: Original strand, 42072716 - 42072802
Alignment:
| Q |
144 |
caaatcatatgaatttcgtataaattttgtggaatccatgtaaattttaatcaatgaaaaagtgtgttaaaaagtgtatgttgctagta |
232 |
Q |
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| T |
42072716 |
caaatcatatgggtctcatataaatttggtgggtcccatgtaaattttaaccaataaaaaagagtgttaaaa--tgtgtgttgctagta |
42072802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Complemental strand, 21203879 - 21203835
Alignment:
| Q |
181 |
atgtaaattttaatcaatgaaaaagtgtgttaaaaagtgtatgtt |
225 |
Q |
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| T |
21203879 |
atgtaaattttaatcaattaaagagtgtgttaaaaaatgcatgtt |
21203835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 41840658 - 41840622
Alignment:
| Q |
162 |
tataaattttgtggaatccatgtaaattttaatcaat |
198 |
Q |
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| T |
41840658 |
tataaatttggtggaacccatgtaaattttaatcaat |
41840622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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