View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_73 (Length: 337)
Name: NF1304_high_73
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_73 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 52 - 329
Target Start/End: Complemental strand, 36934286 - 36934009
Alignment:
| Q |
52 |
ctaatgatcttcacttctgctgagtattgttttacaccctgccttgaatctgctgaaatcctcttgatagctgcaactgagttcgagtctttaaaatagc |
151 |
Q |
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| T |
36934286 |
ctaatgatcttcacttctgcggagtattgttttacaccctgccttgaatctgctgaaatcctcttgatagctgcaactgagttcgagtctttaaaatagc |
36934187 |
T |
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| Q |
152 |
ccttataaacaccgccaaaaccaccttggccaagcttctgtgtctcttcaaagttgtttgttgcattcaacaattcataataactaatcttctttggtcc |
251 |
Q |
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| T |
36934186 |
ccttataaacaccgccaaaaccaccttggcctagcttctgtgtctcttcaaagttgtttgttgcattcaacaattcataataactaatcttctttggtcc |
36934087 |
T |
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| Q |
252 |
agcacccatttggaattcatcatccatatcctgatcagaagtggtttctgaagtaggttcatcttcttttcctttgtt |
329 |
Q |
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| T |
36934086 |
agcacccatttggaattcatcatccatatcctgatcagaagtggtttctgaagtaggttcatcttcttttcctttgtt |
36934009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 138 - 278
Target Start/End: Complemental strand, 47871323 - 47871183
Alignment:
| Q |
138 |
gtctttaaaatagcccttataaacaccgccaaaaccaccttggccaagcttctgtgtctcttcaaagttgtttgttgcattcaacaattcataataacta |
237 |
Q |
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|||||| |||||||| ||||||||||| |||||||||||||| || | ||| ||||| ||||||||||| || |||||| | | ||||| || ||| | | |
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| T |
47871323 |
gtctttcaaatagcctttataaacaccaccaaaaccaccttgtcctatcttttgtgtttcttcaaagttattggttgcacttaccaatttattatagcaa |
47871224 |
T |
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| Q |
238 |
atcttctttggtccagcacccatttggaattcatcatccat |
278 |
Q |
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| T |
47871223 |
aactttttaggtccagttcccttttggaattcatcatccat |
47871183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 278
Target Start/End: Original strand, 47874223 - 47874362
Alignment:
| Q |
139 |
tctttaaaatagcccttataaacaccgccaaaaccaccttggccaagcttctgtgtctcttcaaagttgtttgttgcattcaacaattcataataactaa |
238 |
Q |
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||||| |||||||| ||||||||||| |||||||||||||| || | ||| | || ||| ||||||| ||||||||| ||| ||||| | ||| | || |
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| T |
47874223 |
tctttcaaatagcctttataaacaccaccaaaaccaccttgccctatcttttctgcttctgcaaagttatttgttgcactcaccaatttgttatagcaaa |
47874322 |
T |
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| Q |
239 |
tcttctttggtccagcacccatttggaattcatcatccat |
278 |
Q |
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| T |
47874323 |
actttttaggtccagtgcccttttggaattcatcatccat |
47874362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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