View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_79 (Length: 330)
Name: NF1304_high_79
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_79 |
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Alignment Details
Target: chr6 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 23 - 315
Target Start/End: Complemental strand, 11645072 - 11644782
Alignment:
| Q |
23 |
atgttgatttccagcaactggaacctcataggtctaaactcaaatttaaatgtagtgatttttggaatagcgatgtgtttggataaaataatacagtctc |
122 |
Q |
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| T |
11645072 |
atgttaatttccagcaactggaacctcctaggtctaaactcaaatttaaatgtagtgatttttgaaatagcaatgtgtttggataaaataata--gtcta |
11644975 |
T |
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| Q |
123 |
tttgatggtcctctctttgttaccgaaatgctgccaaatcgatatggaggagttgcaatctcgcacacaatgaaggaaagtctcatcatgtaggccactc |
222 |
Q |
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| T |
11644974 |
tttgatggtcctctctttgttaccgaaatgctgccaaatcgatatggaggagttgcaatctcgcacacaatgaaggaaagtctcatcatttaggccactc |
11644875 |
T |
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| Q |
223 |
ctagcacaaacgttatttttagcaatgtttctgattgagcaaggagagggtgggtaccgagttgtaacaagctaaccaaatgagaaacttgat |
315 |
Q |
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| T |
11644874 |
ctagcacaaacgctatttttagcaatgtttctgattgagcaaggagagggtgggtacagagttgtgacaagctaaccaaatgagaaacttgat |
11644782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 218
Target Start/End: Original strand, 50823485 - 50823527
Alignment:
| Q |
176 |
tgcaatctcgcacacaatgaaggaaagtctcatcatgtaggcc |
218 |
Q |
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| T |
50823485 |
tgcaatcacgcacacaatgaagaaaagtctcatcatgaaggcc |
50823527 |
T |
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