View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_81 (Length: 325)
Name: NF1304_high_81
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_81 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 48251026 - 48251324
Alignment:
| Q |
13 |
agcttatattttcgtttaagctaatataatttgttttcataagctatctaatctatcatcttgaa-----------aatccaaattccagtgtgacttta |
101 |
Q |
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| T |
48251026 |
agcttatattttcgtttaagctaatataatttgttttcataagctatctaatctatcatcttgaagagcttatgaaaatccaaattccagtttgacttta |
48251125 |
T |
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| Q |
102 |
agttaacatgtagctgaatacaagttcaagttc------tactttcaatgctcatttcaagctactagttcatctgcttcnnnnnnnngtttatatatgt |
195 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |
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| T |
48251126 |
agttaacatgtagctgaatacaagttcaagttcaagttctactttcaatgctcatttcaagctactagttcatctgcttctttttt---tttgtttatgt |
48251222 |
T |
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| Q |
196 |
atttcaatttatttcctaaattatgttactgtttctttcttttcagaatcccgtaagttttctctgcatcagactagagcttcttcttcagaagaaacat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48251223 |
atttcaatttatttcctaaattatgttactgtttctttcttttcagaatcccgtaagttttctctgcatcagactagagcttcttcttcagaagaaacat |
48251322 |
T |
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