View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_82 (Length: 321)
Name: NF1304_high_82
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_82 |
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Alignment Details
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 166 - 304
Target Start/End: Original strand, 11902865 - 11903003
Alignment:
| Q |
166 |
aatgttactgatgataatgttgcagaatcaattggttgtattttataaattacaatcttcatggttagttataattataatcttcaactcaataccacat |
265 |
Q |
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| T |
11902865 |
aatgttactgatgataatgttgcagaatcaattggttgtattttataaattacaatcttcatggttagttataattataatcttcaactcaataccacat |
11902964 |
T |
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| Q |
266 |
ataaagatttaaataaaggaatgtgatcgcgatataggc |
304 |
Q |
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| T |
11902965 |
ataaagatttaaataaaggaatgtgatcgcgatataggc |
11903003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 135
Target Start/End: Original strand, 33757681 - 33757804
Alignment:
| Q |
11 |
aagaatatttttcctattccttatattcatatatgacttttgctatagnnnnnnnnnntagtctaaatgcattaaggtgtatatggattatgataccaac |
110 |
Q |
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| T |
33757681 |
aagaatatttttcctattccttatattcatatatgacttttgctatagaaaaaaaaa-tagtctaaatgcattaaggtgtatatggattatgataccaac |
33757779 |
T |
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| Q |
111 |
aatagtttggtgacaactaggtttt |
135 |
Q |
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| T |
33757780 |
aatagtttggtgacaactaggtttt |
33757804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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