View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_87 (Length: 314)
Name: NF1304_high_87
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_87 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 46126336 - 46126557
Alignment:
| Q |
9 |
agcagagacgcgactatgctgacactttgtctgactgggctgaaaaacattttaaaggcaggagaaattaacaaggacaagggattatataagggggtca |
108 |
Q |
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| T |
46126336 |
agcacagacgcgactatgctgacactttgtctgactgggctgaaaaacattttaaaggcaggagaaattaacaaggataagggattatataagggggtca |
46126435 |
T |
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| Q |
109 |
atgtttatgctcaaatgattgaagagtgtgcaggattggataagattgcaagattgcaaagctatgacaacaataacatttacaaaaaggctgtggagat |
208 |
Q |
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| T |
46126436 |
atgtttatgctcaaatgattgaagagtgtgcaggattggataagattgcaagattgcaaagctatgacaacaataacatttacaaaaaggctgtggagat |
46126535 |
T |
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| Q |
209 |
tttggagaaatattttcctgag |
230 |
Q |
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|||||||||||||||||||||| |
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| T |
46126536 |
tttggagaaatattttcctgag |
46126557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 46705064 - 46705225
Alignment:
| Q |
14 |
agacgcgactatgctgacactttgtctgactgggctgaaa------aacattttaaaggcaggagaaattaacaaggacaagggattatataagggggtc |
107 |
Q |
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| T |
46705064 |
agacgcgtctatgctggaacgttgtctgactgggctgaaactgaaaaacattttaaaggcaggagaaattaacaagga------------taagggggtc |
46705151 |
T |
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| Q |
108 |
aatgtttatgctcaaatgattgaagagtgtgcaggattggataagattgcaagattgcaaagctatgacaacaa |
181 |
Q |
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| T |
46705152 |
aatgtttatgctaaaatgattgaagagtgtgcaggatcagataagattgaaagtttgcaaagctatgataacaa |
46705225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 46131967 - 46132043
Alignment:
| Q |
9 |
agcagagacgcgactatgctgacactttgtctgactgggctgaaaaacattttaaaggcaggagaaattaacaagga |
85 |
Q |
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| T |
46131967 |
agcacagacgcggatatgctgggactttgtctgactgggctgtataacattttaaaggcaggagaaattaacaagga |
46132043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 46132047 - 46132093
Alignment:
| Q |
125 |
gattgaagagtgtgcaggattggataagattgcaagattgcaaagct |
171 |
Q |
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| T |
46132047 |
gattaaagagtgtgcaggattggataagattaaaagattgcaaagct |
46132093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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