View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_high_91 (Length: 297)
Name: NF1304_high_91
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_high_91 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 35 - 255
Target Start/End: Original strand, 46914658 - 46914874
Alignment:
| Q |
35 |
gtcctgtaactgtgggaagagagtctgcaaatactagcaaacaaactcatgtacaataagcttggttttcttcaattatggtagtagggcatattggctc |
134 |
Q |
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| T |
46914658 |
gtcctgtaactgtgggaagagagtctgcaaatactagcaaacaaactca----caataagcttggttttcttcaattatggtagtagggcatattggctc |
46914753 |
T |
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| Q |
135 |
tccataatcatctactgaacaagttaattagctctaggctcaagaaagtagcaatggttaaaaaagtaagaaaataaaagttaccaactctttacataaa |
234 |
Q |
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| T |
46914754 |
tccataatcatctactgaacaagttaattagctctaggctcaagaaagtagcaagggttaaaaaagtaagaaaataaaagttaccaactctttacataaa |
46914853 |
T |
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| Q |
235 |
cccaagcaatgatgtaaattt |
255 |
Q |
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||||||||||||||||||||| |
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| T |
46914854 |
cccaagcaatgatgtaaattt |
46914874 |
T |
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