View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1304_high_96 (Length: 285)

Name: NF1304_high_96
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1304_high_96
NF1304_high_96
[»] chr8 (2 HSPs)
chr8 (13-257)||(26589119-26589363)
chr8 (26-85)||(1163443-1163501)
[»] chr1 (2 HSPs)
chr1 (13-229)||(18550398-18550613)
chr1 (13-97)||(2980429-2980513)
[»] chr6 (3 HSPs)
chr6 (13-249)||(32934368-32934603)
chr6 (13-249)||(7733364-7733597)
chr6 (13-97)||(24586217-24586301)
[»] chr2 (3 HSPs)
chr2 (104-249)||(4791814-4791959)
chr2 (13-55)||(4791735-4791777)
chr2 (107-144)||(4791779-4791816)
[»] chr5 (1 HSPs)
chr5 (13-95)||(12384189-12384271)
[»] chr3 (1 HSPs)
chr3 (13-97)||(5700550-5700634)


Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 26589119 - 26589363
Alignment:
Q  13 aatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatggaattaatgtttattaacaaagcaacaacaacagaaatagaaggtttt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||    
T  26589119 aatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatggaattattgtttattaacaaagcaacaacaacagaaacataaggtttt 26589218  T
Q  113 tgcaataatagtggtgtggaattggaagtgaatcactacttatactggtggtgtggtgacatggtgtggaattgaaagtgaattgctacaaaataacaac 212  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  26589219 tgcaacaatagtagtgtggaactggaagtgaatcactacttatactggtggtgtggtgacatgatgtggaattggaagtgaattgctacaaaataacaac 26589318  T
Q  213 aatagtggtgtggtgtgaaatcggaagagaatcgctcagctatgt 257  Q
    |||||||||||||||||||| | ||||||||||||||||||||||    
T  26589319 aatagtggtgtggtgtgaaaccagaagagaatcgctcagctatgt 26589363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 1163501 - 1163443
Alignment:
Q  26 tagaagacaaaaataagaataaaggtaacaacttacatggaattaatgtttattaacaaa 85  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||    
T  1163501 tagaagacaaaaataagaataaaggtaacaacttacatgg-attaatatttgttaacaaa 1163443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 18550398 - 18550613
Alignment:
Q  13 aatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatggaattaatgtttattaacaaagcaacaacaacagaaatagaaggtttt 112  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||    
T  18550398 aatatagtagaactagaagacaaaaataagattaaaggtaacaacttacatgggattaatgtttattaacaaagcaacaacaacagaag-agaaggtttt 18550496  T
Q  113 tgcaataatagtggtgtggaattggaagtgaatcactacttatactggtggtgtggtgacatggtgtggaattgaaagtgaattgctacaaaataacaac 212  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||    
T  18550497 tgcaacaatagtggtgtggaactggaagtgaatcgctacttatactggtggtgtggtgacatggtgtgaaattggaagtgaatcgctacaaaataacaac 18550596  T
Q  213 aatagtggtgtggtgtg 229  Q
    |||||||||||||||||    
T  18550597 aatagtggtgtggtgtg 18550613  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 2980513 - 2980429
Alignment:
Q  13 aatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatggaattaatgtttattaacaaagcaacaacaaca 97  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||  ||||||||||    
T  2980513 aatataatagaattagaagacaaaaataagaataaaggtaacaacttacaggggattaatgtttattaacaaaataacaacaaca 2980429  T

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Target: chr6 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 32934368 - 32934603
Alignment:
Q  13 aatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatggaattaatgtttattaacaaagcaacaacaacagaaatagaaggtttt 112  Q
    |||||||||||||||||||||||| ||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||| |||||    
T  32934368 aatatagtagaactagaagacaaagataagaataaatgtaacatcttacatgggattaatgtttattaacaaagcaacaacaacagaac-agaaagtttt 32934466  T
Q  113 tgcaataatagtggtgtggaattggaagtgaatcactacttatactggtggtgtggtgacatggtgtggaattgaaagtgaattgctacaaaataacaac 212  Q
    ||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||  |||||||||||||||    
T  32934467 tgcaacaatagtggtgtggaactggaagtgaatcgctacttatactggtggtgtggtgacatggtgtggaattggaaatgaatcactacaaaataacaac 32934566  T
Q  213 aatagtggtgtggtgtgaaatcggaagagaatcgctc 249  Q
    ||||||||||||||||| ||  ||||| |||||||||    
T  32934567 aatagtggtgtggtgtggaactggaagtgaatcgctc 32934603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 13 - 249
Target Start/End: Original strand, 7733364 - 7733597
Alignment:
Q  13 aatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatggaattaatgtttattaacaaagcaacaacaacagaaatagaaggtttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||  || | || |||||    
T  7733364 aatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatgggattaatgtttattaacatagcaacaacaaca-taacataatgtttt 7733462  T
Q  113 tgcaataatagtggtgtggaattggaagtgaatcactacttatactggtggtgtggtgacatggtgtggaattgaaagtgaattgctacaaaataacaac 212  Q
    ||||| ||||||| ||||||| |||||||||||  ||||||||||| |||||||||||  |||||||||||||| |||||||| ||||||||||||||||    
T  7733463 tgcaacaatagtgctgtggaactggaagtgaatagctacttatactagtggtgtggtg--atggtgtggaattggaagtgaatcgctacaaaataacaac 7733560  T
Q  213 aatagtggtgtggtgtgaaatcggaagagaatcgctc 249  Q
    |||||||||| |||||| ||  ||||| |||||||||    
T  7733561 aatagtggtgcggtgtggaactggaagtgaatcgctc 7733597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 24586217 - 24586301
Alignment:
Q  13 aatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatggaattaatgtttattaacaaagcaacaacaaca 97  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  24586217 aatataatagaattagaagacaaaaataagaataaaggtaacaacttacatgggattaatgtttattaacaaaataacaacaaca 24586301  T

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Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 104 - 249
Target Start/End: Original strand, 4791814 - 4791959
Alignment:
Q  104 gaaggtttttgcaataatagtggtgtggaattggaagtgaatcactacttatactggtggtgtggtgacatggtgtggaattgaaagtgaattgctacaa 203  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  ||||||    
T  4791814 gaaggtttttgcaacaatagtggtgtggaactggaagtgaatcactacttataccggtggtgtggtgacatggtgtggaattggaagtgaatcactacaa 4791913  T
Q  204 aataacaacaatagtggtgtggtgtgaaatcggaagagaatcgctc 249  Q
    |||||||||||||||||||||||||| ||| | ||| |||||||||    
T  4791914 aataacaacaatagtggtgtggtgtggaattgtaagtgaatcgctc 4791959  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 4791735 - 4791777
Alignment:
Q  13 aatatagtagaactagaagacaaaaataagaataaaggtaaca 55  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  4791735 aatatagtagaactagaagacaaaaataagattaaaggtaaca 4791777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 4791779 - 4791816
Alignment:
Q  107 ggtttttgcaataatagtggtgtggaattggaagtgaa 144  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  4791779 ggtttttgcaacaatagtggtgtggaattggaagtgaa 4791816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 95
Target Start/End: Original strand, 12384189 - 12384271
Alignment:
Q  13 aatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatggaattaatgtttattaacaaagcaacaacaa 95  Q
    ||||||||||||||||||||||||||||| ||||||| |||||||||| | || |||||||||||||||||||  ||||||||    
T  12384189 aatatagtagaactagaagacaaaaataaaaataaagataacaacttaaaggggattaatgtttattaacaaaataacaacaa 12384271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 5700634 - 5700550
Alignment:
Q  13 aatatagtagaactagaagacaaaaataagaataaaggtaacaacttacatggaattaatgtttattaacaaagcaacaacaaca 97  Q
    |||||| ||||| ||||||||||||||||  ||||||||||||||||||| || |||||||||||||||||||  ||||||||||    
T  5700634 aatataatagaattagaagacaaaaataaagataaaggtaacaacttacaggggattaatgtttattaacaaaataacaacaaca 5700550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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