View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_101 (Length: 311)
Name: NF1304_low_101
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_101 |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 1922208 - 1921901
Alignment:
| Q |
1 |
aaaatgcgagtaaaataagttcattgattgaatgaatgtatctaaagtgaaatgtacatgtggtgtttataaacaaagttttatagcatcaaattcaaat |
100 |
Q |
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| T |
1922208 |
aaaatgcgagtaaaataagttaattgattgactgaatgtatctaaagtgaaacgtacatgtggtgtttataaacaaagttttatagcatcaaattcaaat |
1922109 |
T |
|
| Q |
101 |
tatattgtccatcaacatgaccataaaatctaaaccttgaccatcattattcgactaaatttgtgt--------gtatagtgtaaaaatgtgatagtggt |
192 |
Q |
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|||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
1922108 |
tatattgtccatcaacatgaccatcaaaactaaaccttgactatcattattcgactaaatttgtgtgtatctatgtatagtgtaaaaatgtgataggggt |
1922009 |
T |
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| Q |
193 |
cttgtgtacacgggtgtcccatattttggcatcactttcacggtctttcctaatccctccctccatctctctctaaaaggatccctaattatgtcaaatt |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1922008 |
cttgtgtacacgggtgtcccatattttggcatcactttcacggtctatcctaatccctccctccatctctctctaaagggatccctaattatgtcaaatt |
1921909 |
T |
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| Q |
293 |
ttattcat |
300 |
Q |
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|||||||| |
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| T |
1921908 |
ttattcat |
1921901 |
T |
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