View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_104 (Length: 309)
Name: NF1304_low_104
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 3881049 - 3880770
Alignment:
| Q |
1 |
gatcgagattcaaatcatgaatcggaagacctattttccgaatattatccaaatatttactacgattcatgatttattcaaaatcaagatatgacttcaa |
100 |
Q |
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| T |
3881049 |
gatcgagattcaaatcatgaatcggaagacctattttccgaatattatccaaatatttactacgattcatgatttattcaaaatcaagatatgacttcaa |
3880950 |
T |
|
| Q |
101 |
ggtatcttaatacactgataataactgtggtcccaattacaaagccttaacataacagcaacctctttaactgcaaatgtataaaactattacttaaacc |
200 |
Q |
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| T |
3880949 |
ggtatcttaatacactgataataactgtggtcccaattacaaagccttaacataacagcaacctcttggactgcaaatgtataaaactattacttaaacc |
3880850 |
T |
|
| Q |
201 |
atgcagatagctaaataaatacaagcaaaagatgttatactattattctgtagttcttatttcacatagttcaacacatg |
280 |
Q |
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| T |
3880849 |
atgcagatagctaaataaatacaagcaaaagatgttatactattattctgtagttcttatttcacatagttcaacacatg |
3880770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 105 - 255
Target Start/End: Complemental strand, 3867065 - 3866918
Alignment:
| Q |
105 |
tcttaatacactgataataactgtggtcccaa-ttacaaagccttaacataacagcaacctctttaactgcaaatgtataaaactattacttaaaccatg |
203 |
Q |
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| T |
3867065 |
tcttaacacgctgataataaccgtggtcccaaattacaaagccctaatacaaca---acctctaggaatg-aaatgtatgaagctattacttaaaccatg |
3866970 |
T |
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| Q |
204 |
cagatagctaaataaatacaagcaaaagatgttatactattattctgtagtt |
255 |
Q |
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| T |
3866969 |
cagatagctaaataaatacaagcaaacgatgttaacctattattctgtagtt |
3866918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 15201638 - 15201604
Alignment:
| Q |
9 |
ttcaaatcatgaatcggaagacctattttccgaat |
43 |
Q |
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| T |
15201638 |
ttcaaatcatgaatcggaagacctattttccgaat |
15201604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 5299150 - 5299122
Alignment:
| Q |
1 |
gatcgagattcaaatcatgaatcggaaga |
29 |
Q |
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| T |
5299150 |
gatcgagattcaaatcatgaatcggaaga |
5299122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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