View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1304_low_107 (Length: 300)

Name: NF1304_low_107
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1304_low_107
NF1304_low_107
[»] chr3 (10 HSPs)
chr3 (196-253)||(26555476-26555533)
chr3 (202-240)||(2125277-2125315)
chr3 (202-240)||(28211740-28211778)
chr3 (219-253)||(52116824-52116858)
chr3 (205-253)||(22418553-22418601)
chr3 (202-253)||(25069246-25069297)
chr3 (204-238)||(43055608-43055642)
chr3 (204-236)||(498035-498067)
chr3 (204-236)||(50385874-50385906)
chr3 (137-165)||(52118379-52118407)
[»] chr1 (12 HSPs)
chr1 (137-253)||(22788391-22788507)
chr1 (195-251)||(18431702-18431758)
chr1 (202-240)||(7786798-7786836)
chr1 (138-178)||(18431649-18431689)
chr1 (205-253)||(37187911-37187959)
chr1 (202-253)||(1014052-1014103)
chr1 (195-236)||(6154642-6154683)
chr1 (204-236)||(2123859-2123891)
chr1 (204-236)||(32940712-32940744)
chr1 (204-236)||(33403441-33403473)
chr1 (204-236)||(38741000-38741032)
chr1 (204-236)||(50158606-50158638)
[»] chr8 (3 HSPs)
chr8 (201-253)||(28535193-28535245)
chr8 (202-230)||(11464469-11464497)
chr8 (204-236)||(29247177-29247209)
[»] chr6 (5 HSPs)
chr6 (195-254)||(16692961-16693020)
chr6 (137-178)||(16693040-16693081)
chr6 (202-250)||(5014167-5014215)
chr6 (137-178)||(5014100-5014141)
chr6 (204-237)||(595543-595576)
[»] chr2 (2 HSPs)
chr2 (137-253)||(16916381-16916491)
chr2 (254-286)||(2584137-2584169)
[»] chr7 (5 HSPs)
chr7 (202-240)||(38663016-38663054)
chr7 (137-178)||(46437375-46437416)
chr7 (205-253)||(28998020-28998068)
chr7 (204-247)||(46437312-46437355)
chr7 (204-236)||(46913464-46913496)
[»] chr5 (4 HSPs)
chr5 (195-236)||(424823-424864)
chr5 (201-240)||(25634439-25634478)
chr5 (197-236)||(18113827-18113866)
chr5 (204-236)||(34225693-34225725)
[»] chr4 (2 HSPs)
chr4 (204-254)||(51513131-51513181)
chr4 (204-236)||(2917958-2917990)


Alignment Details
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 196 - 253
Target Start/End: Complemental strand, 26555533 - 26555476
Alignment:
Q  196 taggcaagaatctggtgtggcagctgccacaccatgtttcacactccatccgcccctg 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26555533 taggcaagaatctggtgtggcagctgccacaccatgtttcacactccatccgcccctg 26555476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 2125315 - 2125277
Alignment:
Q  202 agaatctggtgtggcagctgccacaccatgtttcacact 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2125315 agaatctggtgtggcagctgccacaccatgtttcacact 2125277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 28211740 - 28211778
Alignment:
Q  202 agaatctggtgtggcagctgccacaccatgtttcacact 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28211740 agaatctggtgtggcagctgccacaccatgtttcacact 28211778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 253
Target Start/End: Complemental strand, 52116858 - 52116824
Alignment:
Q  219 ctgccacaccatgtttcacactccatccgcccctg 253  Q
    |||||||||||||||||||||||||||||||||||    
T  52116858 ctgccacaccatgtttcacactccatccgcccctg 52116824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 22418601 - 22418553
Alignment:
Q  205 atctggtgtggcagctgccacaccatgtttcacactccatccgcccctg 253  Q
    ||||||||||||| |||||||||||||||||||| |  |||||||||||    
T  22418601 atctggtgtggcaactgccacaccatgtttcacagtagatccgcccctg 22418553  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 25069297 - 25069246
Alignment:
Q  202 agaatctggtgtggcagctgccacaccatgtttcacactccatccgcccctg 253  Q
    |||| |||||||||||  ||||||||||||||||||||| | ||||||||||    
T  25069297 agaaactggtgtggcatatgccacaccatgtttcacactgcctccgcccctg 25069246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 238
Target Start/End: Original strand, 43055608 - 43055642
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttcaca 238  Q
    |||||||||||||| ||||||||||||||||||||    
T  43055608 aatctggtgtggcaactgccacaccatgtttcaca 43055642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 498035 - 498067
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||| ||||||||||||||||||    
T  498035 aatctggtgtggcaactgccacaccatgtttca 498067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 50385906 - 50385874
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||| ||||||||||||||||||    
T  50385906 aatctggtgtggcaactgccacaccatgtttca 50385874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 52118407 - 52118379
Alignment:
Q  137 ccaatttccactttccttcccttgcctta 165  Q
    |||||||||||||||||||||||||||||    
T  52118407 ccaatttccactttccttcccttgcctta 52118379  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 22788391 - 22788507
Alignment:
Q  137 ccaatttccactttccttcccttgccttatgtttatgcatatnnnnnnnnnnnnnnnnttaggcaagaatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||||||||||||||| ||||||||| |||||                |||||||||||||||||||||||| |||||||||||||||||    
T  22788391 ccaatttccactttccttcccttgccatatgtttatacatataaaaaaaaataaaaaattaggcaagaatctggtgtggcagttgccacaccatgtttca 22788490  T
Q  237 cactccatccgcccctg 253  Q
    |||||||||||||||||    
T  22788491 cactccatccgcccctg 22788507  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 18431702 - 18431758
Alignment:
Q  195 ttaggcaagaatctggtgtggcagctgccacaccatgtttcacactccatccgcccc 251  Q
    |||||| |||||||||||||||||||||||||||||||||||| || ||||||||||    
T  18431702 ttaggctagaatctggtgtggcagctgccacaccatgtttcactctacatccgcccc 18431758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 7786798 - 7786836
Alignment:
Q  202 agaatctggtgtggcagctgccacaccatgtttcacact 240  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  7786798 agaatctggtgtgacagctgccacaccatgtttcacact 7786836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Original strand, 18431649 - 18431689
Alignment:
Q  138 caatttccactttccttcccttgccttatgtttatgcatat 178  Q
    |||||||||||||||||||| | ||||||||||||||||||    
T  18431649 caatttccactttccttcccgtaccttatgtttatgcatat 18431689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 37187959 - 37187911
Alignment:
Q  205 atctggtgtggcagctgccacaccatgtttcacactccatccgcccctg 253  Q
    ||||||||||||| |||||||||||||||||||| |  |||||||||||    
T  37187959 atctggtgtggcaactgccacaccatgtttcacagtagatccgcccctg 37187911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 253
Target Start/End: Complemental strand, 1014103 - 1014052
Alignment:
Q  202 agaatctggtgtggcagctgccacaccatgtttcacactccatccgcccctg 253  Q
    |||| |||||||||||  ||||||||||||||||||||| | ||||||||||    
T  1014103 agaaactggtgtggcatatgccacaccatgtttcacactgcctccgcccctg 1014052  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 6154642 - 6154683
Alignment:
Q  195 ttaggcaagaatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||| |||||||||||| ||||||| ||||||||||||||    
T  6154642 ttaggctagaatctggtgttgcagctgtcacaccatgtttca 6154683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 2123859 - 2123891
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||| ||||||||||||||||||    
T  2123859 aatctggtgtggcaactgccacaccatgtttca 2123891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 32940744 - 32940712
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||| ||||||||||||||||||    
T  32940744 aatctggtgtggcaactgccacaccatgtttca 32940712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 33403473 - 33403441
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||| ||||||||||||||||||    
T  33403473 aatctggtgtggcaactgccacaccatgtttca 33403441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 38741032 - 38741000
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||| ||||||||||||||||||    
T  38741032 aatctggtgtggcaactgccacaccatgtttca 38741000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 50158638 - 50158606
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||| ||||||||||||||||||    
T  50158638 aatctggtgtggcaactgccacaccatgtttca 50158606  T

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Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 201 - 253
Target Start/End: Complemental strand, 28535245 - 28535193
Alignment:
Q  201 aagaatctggtgtggcagctgccacaccatgtttcacactccatccgcccctg 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28535245 aagaatctggtgtggcagctgccacaccatgtttcacactccatccgcccctg 28535193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 11464469 - 11464497
Alignment:
Q  202 agaatctggtgtggcagctgccacaccat 230  Q
    |||||||||||||||||||||||||||||    
T  11464469 agaatctggtgtggcagctgccacaccat 11464497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 29247177 - 29247209
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||| ||||||||||||||||||    
T  29247177 aatctggtgtggcaactgccacaccatgtttca 29247209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 16693020 - 16692961
Alignment:
Q  195 ttaggcaagaatctggtgtggcagctgccacaccatgtttcacactccatccgcccctgt 254  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  16693020 ttaggcaagaatctggtgtggcagctaccacaccatgtttcacactcaatccgcccctgt 16692961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 16693081 - 16693040
Alignment:
Q  137 ccaatttccactttccttcccttgccttatgtttatgcatat 178  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  16693081 ccaatttccactttccttcccttgccttatgtttatgcatat 16693040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 202 - 250
Target Start/End: Original strand, 5014167 - 5014215
Alignment:
Q  202 agaatctggtgtggcagctgccacaccatgtttcacactccatccgccc 250  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||    
T  5014167 agaatctggtgtggcagctgccacaccatgtttcactctacatccgccc 5014215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 178
Target Start/End: Original strand, 5014100 - 5014141
Alignment:
Q  137 ccaatttccactttccttcccttgccttatgtttatgcatat 178  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  5014100 ccaatttccactttccttcccatgccttatgtttatgcatat 5014141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 595576 - 595543
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttcac 237  Q
    |||||||||||||| |||||||||||||||||||    
T  595576 aatctggtgtggcaactgccacaccatgtttcac 595543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 253
Target Start/End: Original strand, 16916381 - 16916491
Alignment:
Q  137 ccaatttccactttccttcccttgccttatgtttatgcatatnnnnnnnnnnnnnnnnttaggcaagaatctggtgtggcagctgccacaccatgtttca 236  Q
    ||||||||||||||||||||| ||||||||||||||||||||                |||||| |||||||||||||||||||| ||||||||||||||    
T  16916381 ccaatttccactttccttcccgtgccttatgtttatgcatataaaaaaaaaa------ttaggctagaatctggtgtggcagctgacacaccatgtttca 16916474  T
Q  237 cactccatccgcccctg 253  Q
    | || ||||||||||||    
T  16916475 ctctacatccgcccctg 16916491  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 2584137 - 2584169
Alignment:
Q  254 taattagcaaattcttagtccaaagatgaatat 286  Q
    |||||||||||||||||||||||||||||||||    
T  2584137 taattagcaaattcttagtccaaagatgaatat 2584169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 38663054 - 38663016
Alignment:
Q  202 agaatctggtgtggcagctgccacaccatgtttcacact 240  Q
    |||||||||||||||||||||||||||||||||||||||    
T  38663054 agaatctggtgtggcagctgccacaccatgtttcacact 38663016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 178
Target Start/End: Complemental strand, 46437416 - 46437375
Alignment:
Q  137 ccaatttccactttccttcccttgccttatgtttatgcatat 178  Q
    ||||||||||||||||||| | ||||||||||||||||||||    
T  46437416 ccaatttccactttccttctcgtgccttatgtttatgcatat 46437375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 28998068 - 28998020
Alignment:
Q  205 atctggtgtggcagctgccacaccatgtttcacactccatccgcccctg 253  Q
    ||||||||||||| |||||||||||||||||||| |  |||||||||||    
T  28998068 atctggtgtggcaactgccacaccatgtttcacagtagatccgcccctg 28998020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 204 - 247
Target Start/End: Complemental strand, 46437355 - 46437312
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttcacactccatccg 247  Q
    ||||| |||||||||||||||||||||||||||| || ||||||    
T  46437355 aatcttgtgtggcagctgccacaccatgtttcactctacatccg 46437312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 46913464 - 46913496
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||| ||||||||||||||||||    
T  46913464 aatctggtgtggcaactgccacaccatgtttca 46913496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 424823 - 424864
Alignment:
Q  195 ttaggcaagaatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  424823 ttaggctagaatctggtgtggcagctgccacaccatgtttca 424864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 201 - 240
Target Start/End: Original strand, 25634439 - 25634478
Alignment:
Q  201 aagaatctggtgtggcagctgccacaccatgtttcacact 240  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  25634439 aagaatttggtgtggcagctgccacaccatgtttcacact 25634478  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 18113827 - 18113866
Alignment:
Q  197 aggcaagaatctggtgtggcagctgccacaccatgtttca 236  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  18113827 aggctagaatctggtgtggcaactgccacaccatgtttca 18113866  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Complemental strand, 34225725 - 34225693
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||| ||||||||||||||||||    
T  34225725 aatctggtgtggcaactgccacaccatgtttca 34225693  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 254
Target Start/End: Original strand, 51513131 - 51513181
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttcacactccatccgcccctgt 254  Q
    ||||| |||||||| |||||||||||||||||||| |  ||||||||||||    
T  51513131 aatctagtgtggcaactgccacaccatgtttcacagtggatccgcccctgt 51513181  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 2917958 - 2917990
Alignment:
Q  204 aatctggtgtggcagctgccacaccatgtttca 236  Q
    |||||||||||||| ||||||||||||||||||    
T  2917958 aatctggtgtggcaactgccacaccatgtttca 2917990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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