View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_109 (Length: 296)
Name: NF1304_low_109
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_109 |
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Alignment Details
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 12243842 - 12243755
Alignment:
| Q |
181 |
aaccccttctctacgcaacaatttctcaatcaatttccctcatttccattatcatcatcttctatcccaat-ttttgtttcttccatt |
267 |
Q |
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| T |
12243842 |
aaccccttctctacgcaacaatttctcaatcaatttccctcatttccattatcatcatcttctatcccaattttttgtttcttccatt |
12243755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 12244110 - 12244027
Alignment:
| Q |
10 |
aacaatattcaactattttacttattagggnnnnnnnncccttccttataatgtttatatttgactattttcctctcagtataat |
94 |
Q |
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| T |
12244110 |
aacactattcaactattttacttattagggttttttt-cccttccttataatgtttatatttgactatttttctctcagtataat |
12244027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 6564163 - 6564235
Alignment:
| Q |
196 |
caacaatttctcaatcaatttccctcatttc-cattatcatcatcttctatcccaatttttgtttcttccatt |
267 |
Q |
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| T |
6564163 |
caacaatttctcaatcaattttccccattttacattatcattatcttctgccccaatttttgtttcttccatt |
6564235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 38963639 - 38963595
Alignment:
| Q |
200 |
aatttctcaatcaatttccctcattt-ccattatcatcatcttct |
243 |
Q |
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| T |
38963639 |
aatttctcaatcaattttccccattttccattatcatcatcttct |
38963595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 243
Target Start/End: Complemental strand, 18657744 - 18657700
Alignment:
| Q |
200 |
aatttctcaatcaatttccctcattt-ccattatcatcatcttct |
243 |
Q |
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| T |
18657744 |
aatttctcaatcaattttccccattttccattatcatcatcttct |
18657700 |
T |
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