View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_11 (Length: 678)
Name: NF1304_low_11
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-126; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 343 - 649
Target Start/End: Complemental strand, 41342858 - 41342548
Alignment:
| Q |
343 |
atactctttcatgggaggaatgaatgttatttgctttcatcatcacaattattgtccaattgctaagttgtgatcaacacatgaccatcacaagg-taag |
441 |
Q |
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| T |
41342858 |
atactctttcatgggaggaatgaatgttatttgctttcatcatcacaatcattgtccaattgctaagttgtgatcaacacatgaccatcacaaagataag |
41342759 |
T |
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| Q |
442 |
attactaaaactctaacttgaaagcccaccaacnnnnnnntctaatgttttaaaatttgttttaggcttcaccgactaatgaaaattctttgaccggcta |
541 |
Q |
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| T |
41342758 |
actactaaaactctaacttgaa-gcccaccaacaaaaaaatctcatgttttaaaatttgttttaggcttcaccgactaatgaaaattctttgaccggcta |
41342660 |
T |
|
| Q |
542 |
gagtcaacattatatatttaagattgaatctgtaaaaacttaagagccaacttattgtttctc----ttaccttcattggcttccaatcgaagtggaagt |
637 |
Q |
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| T |
41342659 |
gagtcaacattatatatttaagatagaatatttaaaaacttaagagccaacttattgtttctcttacttaccttcattggcttccaatcgaagtggaagt |
41342560 |
T |
|
| Q |
638 |
gagagttcaagt |
649 |
Q |
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|||||||||||| |
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| T |
41342559 |
gagagttcaagt |
41342548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 107 - 347
Target Start/End: Complemental strand, 41343118 - 41342877
Alignment:
| Q |
107 |
gctaaagtttaaaatgacacttagaaacttgctacttctcattgattttttggttctcaaatatttaaggtaagttacttgtgtgaaatcgattccctca |
206 |
Q |
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| T |
41343118 |
gctatagtttaaaatgacacttagaaacttgctacttctcattgattttttggttctcaaatatttaaggtaagttacttgtgtgaaatcgattccctca |
41343019 |
T |
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| Q |
207 |
taaa-tcatatgctatctatttcaggtggatttcttccttggcaatcctggaaaagattcttctccagttaatgtattgtagagcattatacatctttgt |
305 |
Q |
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| T |
41343018 |
taaaatcatatgctatctatttcaggtggatttcttccttggcaatcctggaaaagattcttctccagttaatgtattgtagagcattatacatctttgt |
41342919 |
T |
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| Q |
306 |
ttgtggcatatagtaaacttatttgtaaatattcaaaatact |
347 |
Q |
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| T |
41342918 |
ttgtggcatatagtaaacttatttgtaaatattcaaaatact |
41342877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 41343186 - 41343105
Alignment:
| Q |
11 |
agaatatggtatgtttattgaattctcttaatcttgattataagcattaatatcatcattttgatcatgctatagtgtaaaa |
92 |
Q |
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| T |
41343186 |
agaatgtggtatgtttattgaattctcttaatcttgattataagcattaatatcatcattttgatcatgctatagtttaaaa |
41343105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 211 - 283
Target Start/End: Complemental strand, 41325634 - 41325562
Alignment:
| Q |
211 |
tcatatgctatctatttcaggtggatttcttccttggcaatcctggaaaagattcttctccagttaatgtatt |
283 |
Q |
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| T |
41325634 |
tcatatgctatcgattttaggtggatttcttccttggcagtcaaggaaaagattcttctctggttaatgtatt |
41325562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 245
Target Start/End: Complemental strand, 41338506 - 41338472
Alignment:
| Q |
211 |
tcatatgctatctatttcaggtggatttcttcctt |
245 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
41338506 |
tcatatgctatctatctcaggtggatttcttcctt |
41338472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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