View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_115 (Length: 281)
Name: NF1304_low_115
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_115 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 49438878 - 49438627
Alignment:
| Q |
1 |
tcaagctagattccatcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtggctttcccagtgtggtcaaatgggttgacca |
100 |
Q |
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| T |
49438878 |
tcaagctagattccatcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtggctttcccagtgtggtcaaatgggttgatca |
49438779 |
T |
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| Q |
101 |
tgttgtacaccatggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgttagcattttgaactgcaaaacccttgttgtg |
200 |
Q |
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| T |
49438778 |
tgttgtacaccatggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgttagcattttgaactgcaaaacccttgttgtg |
49438679 |
T |
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| Q |
201 |
ctcgacttgttttcatttaatgcgaaggatttttcttctgttagactcccct |
252 |
Q |
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| T |
49438678 |
ctcgacttgttttcatttaatgcgaaggatttttcttctgttagactcccct |
49438627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 49435035 - 49434784
Alignment:
| Q |
1 |
tcaagctagattccatcaagagttttcacctcaaggttggatatggtagttcttctcttggatcccgtggctttcccagtgtggtcaaatgggttgacca |
100 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| | ||||| ||||| || || ||||||||| || || || |||||| | |||| |
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| T |
49435035 |
tcaagctagattccatcaagagtttctggctcaaggttggatataatggttctgatcttgcataccttggctttcctagcgtagttaaatggctcaacca |
49434936 |
T |
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| Q |
101 |
tgttgtacaccatggtgttgagagccttcgtctctttcctttcacttacagtgatatgaaattgcccgttagcattttgaactgcaaaacccttgttgtg |
200 |
Q |
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| T |
49434935 |
tgttgtaaaacgcggtgttgagagaattcttctcactcttttctctggcgttgatatgaaattgcccgttagcattttgaactgcaaaacccttgtggag |
49434836 |
T |
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| Q |
201 |
ctcgacttgttttcatttaatgcgaaggatttttcttctgttagactcccct |
252 |
Q |
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||| |||||||||||||||||| ||| | |||||| ||||||||||| |||| |
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| T |
49434835 |
ctccacttgttttcatttaatgtgaaaggtttttcctctgttagacttccct |
49434784 |
T |
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