View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1304_low_116 (Length: 275)

Name: NF1304_low_116
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1304_low_116
NF1304_low_116
[»] chr4 (3 HSPs)
chr4 (26-92)||(55857866-55857932)
chr4 (167-214)||(55857989-55858036)
chr4 (111-144)||(55857887-55857920)
[»] chr2 (3 HSPs)
chr2 (26-89)||(29276664-29276727)
chr2 (167-214)||(29276557-29276604)
chr2 (111-144)||(29276673-29276706)
[»] scaffold0175 (2 HSPs)
scaffold0175 (167-244)||(27647-27724)
scaffold0175 (26-72)||(27528-27574)


Alignment Details
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 55857866 - 55857932
Alignment:
Q  26 ttagcggtaagtatatgagacatttaggtaattatgatcttagcttagacttaaagttatgacagcc 92  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  55857866 ttagcagtaagtatttgagacatttaggtaattatgatcttagcttaaacttaaagtaatgacagcc 55857932  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 214
Target Start/End: Original strand, 55857989 - 55858036
Alignment:
Q  167 tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataa 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  55857989 tgaaatgtgtacattgtttgaaatcaaatattccatggattttgataa 55858036  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 144
Target Start/End: Original strand, 55857887 - 55857920
Alignment:
Q  111 atttagataattatgatcttagcttaaacttaaa 144  Q
    |||||| |||||||||||||||||||||||||||    
T  55857887 atttaggtaattatgatcttagcttaaacttaaa 55857920  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 29276727 - 29276664
Alignment:
Q  26 ttagcggtaagtatatgagacatttaggtaattatgatcttagcttagacttaaagttatgaca 89  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  29276727 ttagcagtaagtatttgagacatttaggtaattatgatcttagcttaaacttaaagtaatgaca 29276664  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 29276604 - 29276557
Alignment:
Q  167 tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataa 214  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||    
T  29276604 tgaaatgtgtacattgtttgaaatcaaatattccatggattttgataa 29276557  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 29276706 - 29276673
Alignment:
Q  111 atttagataattatgatcttagcttaaacttaaa 144  Q
    |||||| |||||||||||||||||||||||||||    
T  29276706 atttaggtaattatgatcttagcttaaacttaaa 29276673  T

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Target: scaffold0175 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 167 - 244
Target Start/End: Original strand, 27647 - 27724
Alignment:
Q  167 tgaaatgtgttcattgtttgaaatcaaatattccatggattttgataatgacagaaaatgccaagaattagtatattt 244  Q
    |||||||||| ||||||||||||| ||||||| |||||||||||||||  |||  ||||| |||||||||||||||||    
T  27647 tgaaatgtgtacattgtttgaaataaaatatttcatggattttgataacaacaataaatgtcaagaattagtatattt 27724  T

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Target: scaffold0175; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 27528 - 27574
Alignment:
Q  26 ttagcggtaagtatatgagacatttaggtaattatgatcttagctta 72  Q
    ||||| |||||||| ||||||||||||||| ||||||||||| ||||    
T  27528 ttagcagtaagtatttgagacatttaggtagttatgatcttacctta 27574  T

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