View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_120 (Length: 271)
Name: NF1304_low_120
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_120 |
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Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 45 - 246
Target Start/End: Complemental strand, 27314147 - 27313948
Alignment:
| Q |
45 |
ggttattcccacaaccaagtattacttattcatcaagtgcaagctagccatgtaagctggtcaatgcctcaccctgcaatgagtaaagtgagtttgacat |
144 |
Q |
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| T |
27314147 |
ggttattcccacaaccaagtattacttattcatcaagtgcaagctagccatgtaagctggtcaatgcctcaccctgcaatgagtaaagtgagtttgacat |
27314048 |
T |
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| Q |
145 |
tagttttttctatacaaatctattatacatgaaaagttcacgtttattaaaacaaagataataaaattttaaaattgtgtttagttcctcttgtaatatt |
244 |
Q |
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| T |
27314047 |
gag--ttttctatacaaatctattatacatgaaaagttcacgtttattaaaacaaagataataaaattttaaaattgtgtttagttcctcttgtaatatt |
27313950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 27230073 - 27230037
Alignment:
| Q |
115 |
accctgcaatgagtaaagtgagtttgacattagtttt |
151 |
Q |
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| T |
27230073 |
accctgcaatgagtaaagtaaatttgacattagtttt |
27230037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 27236624 - 27236588
Alignment:
| Q |
115 |
accctgcaatgagtaaagtgagtttgacattagtttt |
151 |
Q |
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| T |
27236624 |
accctgcaatgagtaaagtaaatttgacattagtttt |
27236588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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