View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1304_low_122 (Length: 263)
Name: NF1304_low_122
Description: NF1304
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1304_low_122 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 263
Target Start/End: Complemental strand, 45102904 - 45102671
Alignment:
| Q |
30 |
aaaaatggtgggacctaccttgtaagcctcacaaggtagtgatgatttataattataagaatttttatcaatttttatggtaagttaaaatttcatcaat |
129 |
Q |
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| T |
45102904 |
aaaaatggtgggacctaccttgtaagcctcacaaggtagtgatgatttataattataagaatttttatcaatttttatggtaagttaaaatttcatcaat |
45102805 |
T |
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| Q |
130 |
aaatgccacagggatcaaatgggacagcattagggacttgtgatagtccaattgtaagttttcaaggccttaagttcttctttagatgtacatgttctac |
229 |
Q |
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| T |
45102804 |
aaatgccacagggatcaaatgggacagcattagggacttgtgatagtccaattgtaagttttcaaggccttaagttcttctttagatgtacatgttctac |
45102705 |
T |
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| Q |
230 |
ttatgtatacaaaattgtatatgatgcaggccat |
263 |
Q |
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| T |
45102704 |
ttatgtatacaaaattgtatatgatgcaggccat |
45102671 |
T |
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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 72
Target Start/End: Original strand, 38661206 - 38661248
Alignment:
| Q |
30 |
aaaaatggtgggacctaccttgtaagcctcacaaggtagtgat |
72 |
Q |
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| T |
38661206 |
aaaaatggtgggacctcccttgtaagcctcataaggtattgat |
38661248 |
T |
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